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Updated Book, Provable Models vs. Executable Models and Use Cases
by Peter DeVries 04 Jun '11

04 Jun '11

A new edition of this book just came out. *Semantic Web for the Working Ontologist, Second Edition: Effective Modeling in RDFS and OWL* [Paperback] Dean Allemang, James Hendler http://www.amazon.com/Semantic-Web-Working-Ontologist-Second/dp/0123859654/ Starting on page 326 there is a good section on OWL subsets and Modeling Philosophy. It describes provable models (decidable) and executable models. There is a lot of good info in here, but I thought I would highlight these sentences. *"In fact, it is quite challenging to come up with a logical system that can represent anything useful that is also decidable" * also under Executable Models. *"A different motivation for modeling in the Semantic Web is to form an integrated picture of some sort of domain by federating information from multiple sources"* Individuals should really read the entire chapter and come to their own conclusions, but I think these are issues that people need to think about. To what extent can we design a system that actually is decidable? How are these models going to be used, what is their purpose, and what are some clear use cases? Here is the use case that started me down path of linked data and the semantic web. I am in location X,Y and have a specimen of family Z. What species of family Z are expected here and what are the characters that can be used to differentiate them? Give me a list of other resources that contain information about these species. Respectfully, - Pete ------------------------------------------------------------------------------------ Pete DeVries Department of Entomology University of Wisconsin - Madison 445 Russell Laboratories 1630 Linden Drive Madison, WI 53706 Email: pdevries(a)wisc.edu TaxonConcept <http://www.taxonconcept.org/> & GeoSpecies<http://about.geospecies.org/> Knowledge Bases A Semantic Web, Linked Open Data <http://linkeddata.org/> Project --------------------------------------------------------------------------------------

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USDA Plants Growth Forms added to TaxonConcept Plants - Example SPARQL Queries
by Peter DeVries 03 Jun '11

03 Jun '11

I have a new update to my data set. It is not in the cloud yet but you can download it or run queries on my server. See http://www.taxonconcept.org/rdf_and_sitemap/ The USDA Plants data set has lists of plants expected in each county and state. I have marked up this data as triples for several states in the Midwest as well as Massachusetts and Texas. I have also marked up the data for each Wisconsin County. The USDA data set also has an attribute called "GrowthForm" I have these attributes marked up in this vocabulary OWL http://lod.taxonconcept.org/ontology/usda_plants.owl Doc http://lod.taxonconcept.org/ontology/usda_plants_doc/index.html Here are the Growth forms I have as triples. usda_plant:Growth_Habit_Tree usda_plant:Growth_Habit_Shrub usda_plant:Growth_Habit_Subshrub usda_plant:Growth_Habit_Forb_Herb usda_plant:Growth_Habit_Graminoid You can see this in this example from the Knowledge Base http://lsd.taxonconcept.org/describe/?url=http%3A%2F%2Flod.taxonconcept.org… bit.ly http://bit.ly/locSNl You can now run the following kinds of queries: What plants with the USDA Growth Form Forb_Herb are expected in Door County WI. PREFIX txn: <http://lod.taxonconcept.org/ontology/txn.owl#> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX dcterms: <http://purl.org/dc/terms/> PREFIX door_county_wi: <http://sws.geonames.org/5250768/> PREFIX usda_plant: <http://lod.taxonconcept.org/ontology/usda_plants.owl#> select distinct ?s, ?o as ?image, ?col_class, ?sciname where { ?s rdf:type txn:SpeciesConcept. ?s rdf:type usda_plant:Growth_Habit_Forb_Herb. ?s txn:isExpectedIn door_county_wi:. ?s txn:inCoLClass ?col_class. ?s txn:hasScientificName ?sciname. optional {?s txn:thumbnail ?o.}. } ORDER BY ASC(?col_class) limit 650 This link is the query encoded in a URI < http://lsd.taxonconcept.org/isparql/view/?query=PREFIX%20txn%3A%20%20%3Chtt… > Since this does not always go though email, here is the bit.ly link http://bit.ly/j5PLzH <http://bit.ly/j5PLzH>Since the a number of the TDWG BioBlitz Species are included in the USDA Plants data set, those species concepts now have the USDA attributes attached. Since many of these related and now linked data sets exist under different names, it would have been difficult for this to work without some identifier like my species concepts. Respectfully, - Pete ------------------------------------------------------------------------------------ Pete DeVries Department of Entomology University of Wisconsin - Madison 445 Russell Laboratories 1630 Linden Drive Madison, WI 53706 Email: pdevries(a)wisc.edu TaxonConcept <http://www.taxonconcept.org/> & GeoSpecies<http://about.geospecies.org/> Knowledge Bases A Semantic Web, Linked Open Data <http://linkeddata.org/> Project --------------------------------------------------------------------------------------

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Fwd: error in TDWG geogrphic classification
by David Remsen (GBIF) 25 May '11

25 May '11

This is probably worth posting here. Begin forwarded message: > From: David Eades <dceades(a)illinois.edu> > Date: 25 May 2011 00:17:20 CEST > To: "'David Remsen (GBIF)'" <dremsen(a)gbif.org> > Cc: "'Burke Chih-Jen Ko (GBIF)'" <bko(a)gbif.org>, 'Hernán Pereira' <ellocodelassembler(a)gmail.com>, "Flood, Rich" <jrflood(a)illinois.edu> > Subject: error in TDWG geogrphic classification > Reply-To: <dceades(a)illinois.edu> > > Dear David, > > Hernán Pereira and Rich Flood have located what we believe is an error in > the TDWG data that has been widely used. The geographic coordinates > associated with Sardinia actually form the outline of Corsica. The > geographic coordinates associated with Corsica actually outline Sardinia. > We got the data from TDWG in 2001. I have separately notified Kew, which > has the same data we got from TDWG available for download at > http://kew.org/gis/tdwg/. > > David > >

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Re: [tdwg-content] ITIS TSNID to uBio NamebankIDs mapping
by Cynthia Parr 24 May '11

24 May '11

> > Quick note -- EOL is also aligning ITIS tsn's with Catalogue of Life, NCBI > identifiers and many other partner sources. They don't all update with the > same frequency on EOL but shouldn't be too stale. > > It might be a little complicated, but you can use the EOL API and find out > the cross-walks http://www.eol.org/api (see expecially the PAGES method) > > Steve, since Bioimages is an EOL partner you could even see exactly how we > align your specific taxa with others. > > Cyndy > > Cynthia Sims Parr, parrc(a)si.edu > Director, Species Pages Group > Encyclopedia of Life http://www.eol.org > Office: 202.633.9513, Fax: 202.633.8742 > > Mailing address: > National Museum of Natural History > Smithsonian Institution > P.O. Box 37012, MRC 106 > Washington, DC 20013-7012 > > > On Tue, May 24, 2011 at 4:50 PM, Nicolson, David <NICOLSOD(a)si.edu>wrote: > >> Hi Steve (and Dave), >> >> [NB: After having composed the email below, just before sending it, I >> re-read your initial email more carefully and realized that you said you >> already had the ITIS TSNs, and were looking to add the NamebankIDs! Doh! >> Well, in case you (or anyone else) is interested in methods of matching >> names to get TSNs, I'll go ahead and send this anyway. But do note the >> comments below about the ITIS "versions" and ongoing overhaul of the >> vascular plant data in ITIS!!! -Dave] >> >> I noticed this just before leaving work last week, and was out yesterday, >> but I wanted to chime in on this. I'm glad the uBio tools are meeting your >> needs (they do have some cool stuff!), but it should be noted that those >> tools are using a static snapshot of ITIS data from January 2009, and we >> have added about 50,000 additional scientific names, and updated tens of >> thousands of names beyond that (most of that in the last 6 months, as the >> frequency of loads dropped off in 2009-2010 due to technical issues). >> >> I also want to note that ITIS is right in the middle of a full update of >> the vascular plant data in ITIS, and we're loading updated families on a >> monthly basis... and at long last we are tackling all the leftover issues >> from several bulk loads from USDA PLANTS data that left unreconciled bits of >> ITIS' older vascular plant data in various confusing states... so it is a >> VAST improvement that is underway. >> >> There are several options for bouncing your names off the current version >> of ITIS. >> >> One is to automate a matching process using the live ITIS data, based on >> the existing ITIS Web Services. I am CC'ing Alan Hampson, our IT fellow who >> built the Web Services ( http://www.itis.gov/web_service.html ), in case >> you'd like to follow up with him on that option. The advantage is that once >> you have a process in place it is completely self-serve and can always >> utilize the current ITIS data. If you have the resources to do this I think >> it would be greatly to your advantage to use this approach. >> >> You can explore some ideas for client software to use the services at: >> http://www.itis.gov/ws_develop.html >> >> And for more information on ITIS web services try >> http://www.itis.gov/ws_description.html >> http://www.itis.gov/ITISWebService.xml >> >> The ability to flag multiply-matched names (as you noted) should probably >> be considered, so that appropriate manual steps can be taken. This solution >> will allow you to take advantage of subsequent updates to ITIS with a >> minimum of additional effort, and given that the plant data are in the >> middle of a major overhaul, this bears consideration! >> >> Another possibility is to grab a full snapshot of the ITIS data, and load >> it into a database so you can do what you wish. The obvious drawback is that >> it goes out of date, as with the ITIS snapshot uBio is currently using. But >> it puts you in the driver's seat re what to do & getting new versions of >> ITIS. Some general information about the full exports is in the following >> page, although conspicuously absent is any mention of the MySQL version >> which (assuming you have the free MySQL properly installed & configured) can >> be loaded with just a few clicks or a few command lines (depending on your >> platform): >> http://www.itis.gov/ftp_download.html >> And the current ITIS data are all here for downloading: >> http://www.itis.gov/downloads/ >> >> A third option, which I note with some trepidation, is the old "Compare >> Nomenclature/Taxonomy" function on the ITIS site: >> http://www.itis.gov/taxmatch_ftp.html >> This is a VERY old function that we do plan on replacing (timeframe not >> yet certain), and it is vulnerable to timeouts, etc., which is why it notes >> to limit the number of names per pass. But with smaller chunks of names it >> does work quite well. The caveat is that I would make sure to choose the 4th >> option in Step 4, as it is at least aware (unlike the 3 other options) of >> multiply-matched name cases, and lists them separately at the bottom of the >> report. Just a bare listing of the scientific names, with the word "name" at >> the top, saved as plain text, is all that is needed for input. >> >> A final option would be to ask someone at ITIS to handle the matching for >> you (leaving you to decide re the multiply-matched names). This might be >> simple from your end, but is suboptimal as it leaves you in the same >> position as you are now should you want or need to compare names again in >> the future (whether due to acquiring new names in your system, or wanting to >> check against a later updated version of ITIS), and it pulls someone here >> (probably me) off of the push to get more updates into ITIS. But in a pinch, >> I'm certainly willing to try to help you, should it come down to that! I >> would just ask that you seriously consider the web services option (in >> particular) or the others above first. >> >> I hope this helps some. If you have already run all your matches against >> the old "ITIS" data via uBio then you might consider re-running (against the >> current ITIS data) at least the leftover names that you did not yet get >> matched. Let us know if you have questions (the itiswebmaster(a)itis.govaddress goes to myself and Alan and several others, so that might be the >> best bet for a follow-up unless you have a question specifically for me). >> >> Regards, >> Dave >> >> David Nicolson >> Data Development Coordinator, Integrated Taxonomic Information System >> Biologist, USGS Core Science Systems, Biological Informatics Program >> nicolsod(a)si.edu Office 202-633-2149 Fax 202-786-2934 >> http://www.itis.gov/ >> http://www.cbif.gc.ca/itis/ >> "Nihil sumas necesse est..." >> >> >> -----Original Message----- >> Date: Fri, 20 May 2011 05:42:03 -0500 >> From: Steve Baskauf <steve.baskauf(a)vanderbilt.edu> >> Subject: Re: [tdwg-content] ITIS TSNID to uBio NamebankIDs mapping >> To: "David Remsen (GBIF)" <dremsen(a)gbif.org> >> Cc: "tdwg-content(a)lists.tdwg.org" <tdwg-content(a)lists.tdwg.org> >> Message-ID: <4DD6457B.2080204(a)vanderbilt.edu> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Thanks, all, for the responses. The "Compare to ITIS" function does >> just what I want. I did a test run of 1000 names and it worked like a >> charm. I will need to do a little massaging because sometimes two or >> more ITIS IDs come back for each uBio ID. But I can handle that. >> Steve >> >> David Remsen (GBIF) wrote: >> > Steve >> > >> > Have you tried this? >> > http://www.ubio.org/clients/ITIS/index.php >> > >> > or this? >> > http://www.ubio.org/services/mapper/index2.php >> > >> > All this ubio talk makes me think we were on to something. Worth a >> thought about adopting the new stnadrds and tools and making it really >> smooth. >> > >> > DR >> > >> > >> > On 20 May 2011, at 04:46, Steve Baskauf wrote: >> > >> > >> >> I have generated a csv spreadsheet of about 39 000 plant names for the >> >> U.S. which has the ITIS TSNIDs for the names in a column. I would like >> >> to have the uBio Namebank IDs in another column of the table. I have >> >> been looking them up on the uBio website by typing in the names as I >> >> need to know the IDs, but after doing about 300 of them, I'm getting >> >> tired of it. Does anybody have a clever idea of a way to get the other >> >> 38 000 Namebank IDs without looking them up. I'm sure that it would be >> >> possible to find this out because uBio gets names from ITIS. However, >> I >> >> haven't seen any clues about how to do it in an automated fashion. I'm >> >> guessing that there might be some way to use the uBio web services, but >> >> if so, it isn't obvious and I probably don't have the skills to carry >> it >> >> out anyway. >> >> >> >> Any ideas? >> >> Steve >> >> >> >> -- >> >> Steven J. Baskauf, Ph.D., Senior Lecturer >> >> Vanderbilt University Dept. of Biological Sciences >> >> >> >> postal mail address: >> >> VU Station B 351634 >> >> Nashville, TN 37235-1634, U.S.A. >> >> >> >> delivery address: >> >> 2125 Stevenson Center >> >> 1161 21st Ave., S. >> >> Nashville, TN 37235 >> >> >> >> office: 2128 Stevenson Center >> >> phone: (615) 343-4582, fax: (615) 343-6707 >> >> http://bioimages.vanderbilt.edu >> >> >> >> _______________________________________________ >> >> tdwg-content mailing list >> >> tdwg-content(a)lists.tdwg.org >> >> http://lists.tdwg.org/mailman/listinfo/tdwg-content >> >> >> >> >> > >> > . >> > >> > >> >> -- >> Steven J. Baskauf, Ph.D., Senior Lecturer >> Vanderbilt University Dept. of Biological Sciences >> >> postal mail address: >> VU Station B 351634 >> Nashville, TN 37235-1634, U.S.A. >> >> delivery address: >> 2125 Stevenson Center >> 1161 21st Ave., S. >> Nashville, TN 37235 >> >> office: 2128 Stevenson Center >> phone: (615) 343-4582, fax: (615) 343-6707 >> http://bioimages.vanderbilt.edu >> >> >> _______________________________________________ >> tdwg-content mailing list >> tdwg-content(a)lists.tdwg.org >> http://lists.tdwg.org/mailman/listinfo/tdwg-content >> >> >> _______________________________________________ >> tdwg-content mailing list >> tdwg-content(a)lists.tdwg.org >> http://lists.tdwg.org/mailman/listinfo/tdwg-content >> > >

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GBIF Seeks a Knowledge Systems Engineer
by David Remsen (GBIF) 24 May '11

24 May '11

Dear TDWG-content-ers GBIF is seeking a committed and proactive Knowledge Systems Engineer to develop a framework for creating and managing controlled vocabularies, thesauri and other knowledge organisation systems. Interested candidates should review the document, “Recommendations for the Use of Knowledge Organisation Systems by GBIF” at http://links.gbif.org/gbif_kos_whitepaper_v1.pdf for a fuller understanding of our requirements. Interested candidates should have knowledge of RDF, OWL, SKOS, the OBO Foundry, Open Ontology Repository principles, the TDWG ontologies and the broad Life Sciences ontology landscape, as well as an understanding of other well-known, generic vocabularies such as Dublin Core, FOAF, etc. Knowledge of principles of the semantic web and Linked Open Data are desirable. Practical experience with existing KOS systems such as the OBO Foundry, BioPortal, Collaborative Protégé, Pool Party or other systems would be highly beneficial. A key asset is the capacity to identify, communicate and facilitate the practical and pragmatic application of KOS principles that facilitate the uptake and use of GBIF-mediated data and infrastructure. Please circulate this posting to relevant lists and parties. This post is an exciting career-enhancing opportunity to work in a multicultural environment for an international organisation at the cutting edge of scientific developments in biodiversity informatics. The post is for two years with a possibility it may be extended. Residence in Denmark is preferred. Deadline for applications is 15 June. I'm happy to answer any questions about the posting. More information can be found on our website at http://www.gbif.org/communications/news-and-events/showsingle/article/gbif-… Best, David Remsen ---------------------------------------------------------------------------- David Remsen, Senior Programme Officer Electronic Catalog of Names of Known Organisms Global Biodiversity Information Facility Secretariat Universitetsparken 15, DK-2100 Copenhagen, Denmark Tel: +45-35321472 Fax: +45-35321480 Mobile +45 28751472 Skype: dremsen ----------------------------------------------------------------------------

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Question about "vocabulary" in Darwin Core Archives assistant
by Steve Baskauf 23 May '11

23 May '11

I am playing around with Darwin Core Arcives, in particular the DwC-A Assistant (http://tools.gbif.org/dwca-assistant/) One thing that I am not exactly clear about is how to use the "Vocabulary" column in the assistant. The description that comes up when you mouse over the column heading says that it should ideally be a URI that identifies the vocabulary and resolves to some machine readable form like RDF. So what I'm wondering is whether I can put what effectively amounts to as a namespace in that spot. For example, a URI for the name "Acer rubrum L." that actually resolves to RDF is: http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:… I think that would qualify as a valid HTTP URI guid because it's the proxied form of an LSID. So I would like to use it as a value for the dwc:scientificNameID column in a DwC-A taxon record. However, the only part of the identifier that makes the string unique within uBio's domain is the last number - if I'm always using a uBio guid, the first approximately 75 characters will be the same for all of the guids. So can I just put "http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:" in the Vocabulary column and then just put the locally unique numbers (e.g. "456216") in the column for dwc:scientificNameID? Should an application using a DwC-A file be smart enough to append the "vocabulary" string on the front of the actual value in the text file? Or is that not how the "Vocabulary" column is intended to be used? Steve -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: VU Station B 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 343-6707 http://bioimages.vanderbilt.edu

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ITIS TSNID to uBio NamebankIDs mapping
by Steve Baskauf 20 May '11

20 May '11

I have generated a csv spreadsheet of about 39 000 plant names for the U.S. which has the ITIS TSNIDs for the names in a column. I would like to have the uBio Namebank IDs in another column of the table. I have been looking them up on the uBio website by typing in the names as I need to know the IDs, but after doing about 300 of them, I'm getting tired of it. Does anybody have a clever idea of a way to get the other 38 000 Namebank IDs without looking them up. I'm sure that it would be possible to find this out because uBio gets names from ITIS. However, I haven't seen any clues about how to do it in an automated fashion. I'm guessing that there might be some way to use the uBio web services, but if so, it isn't obvious and I probably don't have the skills to carry it out anyway. Any ideas? Steve -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: VU Station B 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 343-6707 http://bioimages.vanderbilt.edu

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Another example of non-overlapping concepts
by Peter DeVries 19 May '11

19 May '11

I thought that I would also mention that in addition to The Plants List, the eBird project also uses on overlapping concepts in its bird list (it does have concepts for common hybrids) What is clear to me is that you cannot create graphs like these if every observation can have X number of species (especially those that overlapping ) without any indication which is is the most appropriate one. eBird Occurrence Maps Northern Cardinal http://ebird.org/content/ebird/about/occurrence-maps/northern-cardinal NCBI is also similar. Perhaps a member of the consensus committee can comment? -- Pete ------------------------------------------------------------------------------------ Pete DeVries Department of Entomology University of Wisconsin - Madison 445 Russell Laboratories 1630 Linden Drive Madison, WI 53706 Email: pdevries(a)wisc.edu TaxonConcept <http://www.taxonconcept.org/> & GeoSpecies<http://about.geospecies.org/> Knowledge Bases A Semantic Web, Linked Open Data <http://linkeddata.org/> Project --------------------------------------------------------------------------------------

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Updated Example of TDWG BioBlitz Records showing the utility of dwc_area
by Peter DeVries 13 May '11

13 May '11

One of the advantages of the dwc_area:*Area* encoding, is that it creates one urn for each combination of lat, long, radius. In practice, this is similar to one urn for each GPS reading. An alternative way to get the same list would be a query that includes geo:lat, geo:long and radius. Most people want to think of this as one thing, a point with a PointRadiusSpatialFit- type error measure. I created this demonstration query that finds the BioBlitz observations with geo coordinates and sorts the resulting data by Observer. It also allows you to pick and display different *Areas* from the list of returned records. *Note I have only 708 occurrence records with GPS coordinates. * I still include the geo:lat and geo:long since most toolkits do not understand the proposed ietf.org proposed geo standard. Screenshots of the Pivot Views and a link for the query itself can be found at this bit.ly bundle http://bit.ly/m6c5hI Here is the query REFIX txn: <http://lod.taxonconcept.org/ontology/txn.owl#> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX dcterms: <http://purl.org/dc/terms/> PREFIX foaf: <http://xmlns.com/foaf/0.1/> PREFIX cc: <http://creativecommons.org/ns#> PREFIX time: <http://www.w3.org/2006/time#> PREFIX geo: <http://www.w3.org/2003/01/geo/wgs84_pos#> select distinct ?s, ?o as ?image, ?class, ?order, ?family, ?sciname, ?cname, ?observer, ?lat, ?long, ?area where { ?s rdf:type txn:Occurrence. ?s dcterms:isPartOf < http://lod.taxonconcept.org/ontology/txn.owl#TDWG2010_BioBlitz>. ?s txn:class ?class. ?s txn:order ?order. ?s txn:family ?family. ?s txn:hasScientificName ?sciname. ?s cc:attributionName ?observer. ?s geo:lat ?lat. ?s geo:long ?long. ?s txn:occurrenceHasArea ?area. optional {?s foaf:depiction ?o. ?s txn:commonName ?cname. }. } limit 708 -- Pete ------------------------------------------------------------------------------------ Pete DeVries Department of Entomology University of Wisconsin - Madison 445 Russell Laboratories 1630 Linden Drive Madison, WI 53706 Email: pdevries(a)wisc.edu TaxonConcept <http://www.taxonconcept.org/> & GeoSpecies<http://about.geospecies.org/> Knowledge Bases A Semantic Web, Linked Open Data <http://linkeddata.org/> Project --------------------------------------------------------------------------------------

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Updated Rich's Two Species and additional thoughts and example on how to handle alternative conceptualizations
by Peter DeVries 10 May '11

10 May '11

I have added some additional information the the TaxonConcept KB for Rich's two fish About: Centropyge fisheri se:q72fd Orange Angelfish http://lsd.taxonconcept.org/describe/?url=http%3A%2F%2Flod.taxonconcept.org… bit.ly http://bit.ly/j1c7NF About: Centropyge flavicauda se:Mj6j4 Whitetail Angelfish http://lsd.taxonconcept.org/describe/?url=http%3A%2F%2Flod.taxonconcept.org… bit.ly http://bit.ly/mwQIyh * Assuming the photo's are correct, these examples still need links to representative specimens and other related data. This was done by creating this file and adding it to the triplestore http://assets.taxonconcept.org/fb/index.rdf Data about the image http://lsd.taxonconcept.org/describe/?url=http%3A%2F%2Fassets.taxonconcept.… bit.ly http://bit.ly/jjmnsd If I understand Rich correctly all these images would be instances of the concept *Centropyge fisheri sensu lato* * * *That would need it own URI and could be related by something like this:* * * <http://lod.taxonconcept.org/ses/q72fd#Species> txn:hasWiderAlternativeConceptualization < http://lod.alternativeconcepts.org/ses/10252#Species> <http://lod.taxonconcept.org/ses/Mj6j4#Species> txn:hasWiderAlternativeConceptualization < http://lod.alternativeconcepts.org/ses/10252#Species> and <http://lod.alternativeconcepts.org/ses/10252#Species > txn:hasNarrowerTXNConceptualization < http://lod.taxonconcept.org/ses/q72fd#Species> <http://lod.alternativeconcepts.org/ses/10252#Species > txn:hasNarrowerTXNConceptualization < http://lod.taxonconcept.org/ses/Mj6j4#Species> I think it is cleaner to have the overlapping concepts separated into a different namespace. This implies that the set of alternativeconcepts don't overlap with each other. So what I am proposing allows for alternative concepts. It does not appear that The Plant List has alternative concepts, each species has a current name and the set represents their form of a set of non overlapping concepts. Why isn't this controversial? Note also that things like The Plant List don't do much to improve the lot of those who document and describe species. You cite the authors of The Plant List. This is in contrast to TaxonConcept where you site the species editors and the original author is linked via their DBpedia description. (In many cases these will need to be added to Wikipedia, about 6,000 already) Respectfully, - Pete ------------------------------------------------------------------------------------ Pete DeVries Department of Entomology University of Wisconsin - Madison 445 Russell Laboratories 1630 Linden Drive Madison, WI 53706 Email: pdevries(a)wisc.edu TaxonConcept <http://www.taxonconcept.org/> & GeoSpecies<http://about.geospecies.org/> Knowledge Bases A Semantic Web, Linked Open Data <http://linkeddata.org/> Project --------------------------------------------------------------------------------------

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