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[Biogeosdi] Abstract for TDWG 2007
by Javier de la Torre 02 Aug '07

02 Aug '07

Hi all, As you know I will attend TDWG 2007 and from the lasts messages I received seems that I am the only one attending. Therefore I take the liberty to send an abstract about the workshop we had with all the participants as co-authors. I am mainly taking the abstract from the report and briefly reformulating it for a talk. My first idea was to present this at Renato's session on "integrating biodiversity data" on Thursday 20th, but due to some things going on I might move it to the spatial Model session on Wednesday (Renato I will keep you updated). My idea at the presentation is just to demonstrate the prototype and highlight some of the issues we had with it. More or less what I did at OGC but without explaining what a plant is ,like I did there :D I am asking for teleconference facilities to see if some of you can at least join me remotely for questions or comments. Is there anybody avaialble at least for telephone call then? Hopefully during next week I can work with Tim to set the whole code in TDWG server and we can have it finally host it somewhere permanently. If not and if someone is interested we have it working in a Parallels image that you can run in a mac (and maybe somewhere else Tim?) Cheers and see you all soon. Javi.

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[tdwg-ncd] French metadata interfaces based on the NCD
by Neil Thomson 02 Aug '07

02 Aug '07

Forwarded on behalf on Patricia Kelbert ... -----Original Message----- From: kelbert(a)bohm.snv.jussieu.fr [mailto:kelbert@bohm.snv.jussieu.fr] Sent: 02 August 2007 12:43 To: tdwg-ncd(a)lists.tdwg.org Cc: gbif-fr(a)gbif.fr Subject: [tdwg-ncd] French metadata interfaces based on the NCD As we announced it in january, the french GBIF node developed its own interface for metadata, based on the NCD schema. We made an new interface in PHP for adding metadata, and adapted the Synthesys Web Portal for browsing and updating the data (Python). We started to develop the interfaces in february-march, thus "our" NCD version might not fit to the current version; we added some fields too. You can have a look at the interface (only in french, sorry) : http://www.gbif.fr/?q=fr/node/97 and the portal (still in development and in french) : http://lis-02.snv.jussieu.fr/portail/ Hope it can be useful. Selon lancelot(a)bohm.snv.jussieu.fr: > > > >>>I am pleased to say the the French GBIF node have expressed an early > >>> interest > >>> in making use of the toolkit and have joined this mailing list so > >>> that they > >>> can participate in the discussions - welcome Gaël Lancelot. > >>> > >> > Thank you very much for your warm welcome. I would like, however, to point > out > that I'm not alone in the French GBIF team. In fact, I'm quite certain that > most of the contributions on this list will come from my colleagues, Adil El > Filali and Patricia Kelbert, who have vastly superior computer know-how to > mine. > > This being said, the French node is indeed looking at using NCD for its > metadata > gathering campaign. Due to our timekeeping constraints, we cannot afford to > wait for the NCD toolkit, useful as it would be, and we might well develop > our > NCD tools (database, interface) in parallel to the work done in Amsterdam. > Of > course, we'd be glad to share these developments with the list, in case it > might be of any help. > > Thanks a lot for your support and your work, > > Gaël Lancelot > Scientific Resource Management > GBIF France > 12, rue Cuvier > 75005 PARIS > FRANCE > _______________________________________________ > tdwg-ncd mailing list > tdwg-ncd(a)lists.tdwg.org > http://lists.tdwg.org/mailman/listinfo/tdwg-ncd > >

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[Biogeosdi] Re: path kludge
by Meganck Bart 02 Aug '07

02 Aug '07

Hi Pete, Well, it certainly is a bit more elegant than Dave's string & duct tape solution - still, it worked fine, though. Hope you got through the worst of the red tape by now, and starting to get settled. How is the US in comprison with the UK ? best regards, Bart. On Wed, 2007-08-01 at 12:00 +0200, biogeosdi-request(a)lists.tdwg.org wrote: -- Bart Meganck, ICT & GIS engineer, African Zoology Department. Royal Museum for Central Africa, Leuvensesteenweg 13, B-3080 Tervuren, Belgium. Tel : +32(0)2 769 56 92 Fax : +32(0)2 767 02 42 Email : bart.meganck(a)africamuseum.be Website : www.africamuseum.be ########################################### This message has been scanned by ICT - Africa Museum ________________________________________ 2/8/2007 - Filtered through antispam by ICT

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[Biogeosdi] Path kludge
by Peter Brewer 31 Jul '07

31 Jul '07

Hi Guys, Sorry for being so totally silent these last few weeks. Apologies but I've been moving continent, buying a house, dealing with US red tape etc etc. I stumbled across an interesting webpage and thought of you all. If I remember correctly, this is an easier way of doing Dave/Javi's (?) infamous path kludge in PHP. http://ponvert.wordpress.com/2004/07/24/relative-paths-in-php/ Enjoy! Cheers Pete

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[Biogeosdi] Good dataset for a demonstration project
by Javier de la Torre 27 Jul '07

27 Jul '07

Hi all, You know I like very much Geoserver and I have been using it now for a while. Yesterday I got contacted by Chris Holmes, the chair of the geoserver project steering committee, asking for some good biodiversity datasets. Their idea is to demonstrate the capabilities of geoserver publishing time datasets in KML format. I thought that a really cool demonstration would be to have a dataset of a niche model of a species distribution over the next 50 years, year by year, in a global warming scenario. Something cool that could demonstrate how global warming could potentially affect biodiversity. Therefore I thought in this group there could be someone with a dataset like this and therefore here I am contacting you :) Any idea? Thanks in advance for the help and hope to talk to you soon. Cheers.

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[tdwg-ncd] Fwd: [tdwg-guid] International Standard Collection Identifiers (ISCI) Fwd: [Mdrt] metadata roundtable tomorrow, Wednesday, July 25th
by MarkusDöring 25 Jul '07

25 Jul '07

Hi there, is anyone aware of this activity already? markus > Begin forwarded message: > >> From: <zavalina(a)uiuc.edu> >> Date: July 24, 2007 11:50:28 AM CDT >> To: mdrt(a)mail.lis.uiuc.edu >> Subject: [Mdrt] metadata roundtable tomorrow, Wednesday, July 25th >> >> Dear metadata roundtable members, >> >> Tomorrow, July 25th, Richard Urban will be leading MDRT discussion >> on draft standard for International Standard Collection >> Identifiers (ISCI), which will establish a unique identifier for >> each archival collection and fond. You can access the draft at >> <http://www.niso.org/pdfs/ISO_NP_27730ISCIandWD.pdf>. >> >> The meeting will take place from 12:30 to 2:00 pm at ISRL Commons >> on the third floor of GSLIS building. >> >> The continuation of the DCMI abstract model discussion started >> last week (audio available at http://waterfall.lis.uiuc.edu/dl/ >> classes/mdrt/metadataRoundtable071807.ram)is tentatively scheduled >> for the second half of August, once everyone is back from summer >> vacations. >> >> Have a great week and hope that you will come and participate in >> ISCI discussion. >> >> Sincerely, >> Oksana Zavalina >> Research assistant >> IMLS Digital Collections and Content project >> _______________________________________________ >> Mdrt mailing list >> Mdrt(a)mail.lis.uiuc.edu >> https://mail.lis.uiuc.edu/mailman/listinfo/mdrt

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[tdwg-sdd] Last call: Descriptive data at TDWG 2007
by Gregor Hagedorn 24 Jul '07

24 Jul '07

Dear SDD interest group members! Ten days ago I asked who is interested in talking at TDWG 2007 in Bratislava on descriptive data, adding: "If you whish to participate in this session, please send a rough draft (title and abstract may change later) to g.hagedorn(a)bba.de until 20th Juli." Some may have overlooked this; so far I have received no responses. Unless I receive sufficient calls until Saturday, 28th of July the session: Wednesday 1530-1700 "Descriptive model for analysis, identification, description markup, and taxon pages" may have to be canceled completely. Please consider whether you can participate, I do hope for an interesting meeting! Please note that I will not be able to organize the session after Aug. 3, going on vacation then. The session schedule would have to be fixed before that time and the general deadline of August 15th therefore cannot be applied to this session. You can change both title and abstract however after we agreed on the schedule. Please respond as soon as possible, many thanks! Gregor---------------------------------------------------------- Gregor Hagedorn (G.Hagedorn(a)bba.de) Institute for Plant Virology, Microbiology, and Biosafety Federal Research Center for Agriculture and Forestry (BBA) Königin-Luise-Str. 19 Tel: +49-30-8304-2220 14195 Berlin, Germany Fax: +49-30-8304-2203

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[tdwg-sdd] Descriptive data at TDWG 2007
by Gregor Hagedorn 23 Jul '07

23 Jul '07

Dear SDD interest group members! Please do consider coming to TDWG 2007 in Bratislava! The following topics may be of interest to you: ============= 1. ============= A 90 minute session on Wednesday, 19 Sep called: "Descriptive model for analysis, identification, description markup, and taxon pages" As the name implies, analyses of all kind of descriptive data models are welcome, regardless whether they use SDD or not. Criticism of SDD version 1.1 is also welcome. Due to the launching of the Encyclopedia of Life the taxon page topic is especially relevant. Pleasse note that the SDD interest group is not just concerned with morphological data. Data useful for identification, genetic, or phylogenetic analyses are limited to morphology, and the interested group considers all that are inherent to a taxon (genetically or environmentally coded so they are stable. This includes molecular descriptive data like sequences or patterns, behavior, physiology, etc. Stressing a general perspective both with regard to the kind of data and with regard to how the data are gathered and used will be important and welcome. In the light of the current parallel development of the SPM model, we need to assess whether separate models are needed for specific purposes, or whether a general model can be maintained as SDD presents currently. If you whish to participate in this session, please send a rough draft (title and abstract may change later) to g.hagedorn(a)bba.de until 20th Juli. Limited travel funds for students without funding may be available, covering one of transport costs, per diem (~US$71/night) or accommodation. ============= 2. ============= Existing applications of SDD are also welcome in further sessions on the following day, where two sessions are reserved for "Applications of TDWG standards". ============= 3. ============= On Saturday the SDD interest group will meet. Possible topics: 1. Which way ahead? XML-schema, natural language markup or RDF? Are these combinable? 2. Who wants to lead task groups for feature-vocabularies and ontologies? 2. Which priorities may help to choose? 3. Usability of current SDD schema for natural language markup Please add to this list or propose what you would consider to be most important. Please note that Éamonn will hold a group discussion about the "Species Profile Model" (previously known as "Taxon Data Model") during the 16.00-18.00 slot on Tues 18th Sept. I suggest that people interested in SDD should also go to that meeting. I therefore propose a meeting on the last day (Saturday) ***If you are interested in in-depth discussion, please check your travel plans and try to stay until Sept. 22nd, afternoon. Thanks! *** ============= 4. ============= We will try to have a "late-night show" (working group) on studying SDD and RDF on one evening, currently Tuesday. All SDD or RDF "experts" are welcome to that. It would probably make sense to suggest a separate task group for descriptive data in SPM? Can you have a name for it? ============= 4. ============= Thank you! Gregor Hagedorn---------------------------------------------------------- Gregor Hagedorn (G.Hagedorn(a)bba.de) Institute for Plant Virology, Microbiology, and Biosafety Federal Research Center for Agriculture and Forestry (BBA) Königin-Luise-Str. 19 Tel: +49-30-8304-2220 14195 Berlin, Germany Fax: +49-30-8304-2203

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[tdwg-ncd] Re: Terminology version 2
by Ruud Altenburg 19 Jul '07

19 Jul '07

Hallo all, Carol, thanks for sending the new terminology. I'm at the point of implementing everything into the new database. However, I haven't seen a formal 'go' yet for the new terminology. As I've seen a few last minute suggestions in the email, where do I find the definite version? A real and related problem comes to mind: I have implemented the ISO standards of countries and languages as per Markus's suggestion. However, both the ISO standards and the new terminology are in English only. How do we mix this with the second language option in the toolkit? The ISO 639-1 standard lists 185 languages, ISO 639-3 no less than 7590! In other words, translating things is no real option, but mixing English and a second language also seems very inelegant solution. Regards, Ruud

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[Biogeosdi] Report from OGC meeting
by Javier de la Torre 18 Jul '07

18 Jul '07

Hey Lee, Here I send you what I have written at my return from the OGC meeting. You asked me also for a comment on how i think TDWG should continue working with OGC. I will write that in a later message ok? By the way... i couldnt find any news announcing the MoU between TDWG and OGC :( Cheers. --------- Report of the July 2007 OGC Technical Committee Meeting --------------------- The Open Geospatial Consortium (OGC) held its 61st Technical Committee and Planning Committee Meetings during the week of July 9, 2007 in Paris. TDWG was there represented by Donald Hobern and Javier de la Torre who gave two presentations on the Earth Observation and Natural Resources and Environment Working Group. OGC Technical Committees meetings are a fundamental tool for OGC process in building standards and assure interoperability. During a week, OGC members meet in different working groups, discuss and vote in the process of making or reviewing standards. Thanks to the new MoU between TDWG & OGC (link here but I could not find any news item about this ???) now there can be a representation of TDWG in every OGC meeting and push the interest from the biodiversity informatics community in the development of geospatial standards. In this meeting topics varied from Geographic Markup Language, coverages, the GEOSS project, Web Map Service, Sensor Web Enables and many more. During the Earth Observation, Natural Resources & Environment Working Group Meeting TDWG was presented in two different presentations from Donald Hobern and Javier de la Torre. Donald Hobern presented (available here) the TDWG infrastructure project and GBIF. The new GBIF REST services were presented together with how TDWG is creating a new set of vocabularies that can be use by services which data has something to do with biodiversity. Javier de la Torre presented (available here) the results of the BioGeoSDI meeting (link http://wiki.tdwg.org/twiki/bin/view/ Geospatial/InteroperabilityWorkshop1) with a presentation that made emphasis on the use of primary data and niche modelling together with OGC and TDWG standards. In the other hand there has been several presentations about the Global Earth System of Systems (GEOSS) and the pilot projects that are starting now. GEOSS have recently released their catalog service, a registry where geographic data providers and services can be found to create a truly world wide Spatial Data Infrastructure for the observation of the earth. For the moment only a few services are registered, but they plan in the upcomming months to complete the catalog with every service related to the observation of the earth. Related to the observation of the earth, there is the Sensor Web Enabled (SWE) working group in OGC that has presented several papers in their continuos effort to provide an interoperability framework where all kind of sensors can "talk to each other" in a seamless way. During the meeting the new OGC interoperability program, OWS-5, was discussed. This new initiative include more than a hundred participants with a budget of at least a million dollars. The program is organized in 6 different threads: Sensor Web Enablement (SWE), Geo Processing Workflow (GPW), Information Communities' Semantics (ICS), CAD/GIS/BIM, Agile Geography, Compliance Testing (CITE). Significant work items include geospatial Web service chaining and workflow, enhancements to the KML language, practical application of the Sensor Web, and application of GML to real-world scenarios. There were also discussions on the so called GeoAPI. Together with the creation of standards there are efforts to provide APIs that implement the standards so that different vendor, software producers, can implement them using the same interfaces. The API is available in sourceforge and is implemented in Java. The Web Coverage Service (WCS) was also discussed. There is open discussions on implementing asynchronous services and the use of SOAP encodings, although this seems to be a general discussion among all OGC standards. The meeting about OGC for the Mass was a very crowded one. The aim of the meeting was to identify current trends on the use of geospatial information on Internet. Things like GeoRSS, KML, WMS tiling, etc. Specially interesting is the process of making KML an OGC standard. This has been included in the OWS-5 initiative. In general it has been a nice meeting with lot of ongoing discussions. The OGC procedures seems to work quite well and lots of discussion papers are being prepared continuously that expand or improve OGC vision and their standards. [maybe you want some more personal comments Lee?]

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