- dwc-mixs - lists.tdwg.org

14 Dec 19:00 UTC Review MOU for Sustainable DwC-MIxS Interoperability TG
by Visotheary 07 Dec '21

07 Dec '21

Dear all, Here is a zoom link for our meeting tuesday 14 Dec at 19:00 UTC. All the best, Theary TDWG Executive vous invite à une réunion Zoom planifiée. Sujet : Review MOU for Sustainable DwC-MIxS Interoperability TG Heure : 14 déc. 2021 19:00 Temps universel UTC Participer à la réunion Zoom https://us06web.zoom.us/j/81587155211?pwd=NU01UG5RVUlzdDA4VktQeXZadjBKZz09 ID de réunion : 815 8715 5211 Code secret : 859072 Une seule touche sur l’appareil mobile +13017158592,,81587155211#,,,,*859072# États-Unis (Washington DC) +13126266799,,81587155211#,,,,*859072# États-Unis (Chicago) Composez un numéro en fonction de votre emplacement +1 301 715 8592 États-Unis (Washington DC) +1 312 626 6799 États-Unis (Chicago) +1 346 248 7799 États-Unis (Houston) +1 669 900 6833 États-Unis (San Jose) +1 929 205 6099 États-Unis (New York) +1 253 215 8782 États-Unis (Tacoma) ID de réunion : 815 8715 5211 Code secret : 859072 Trouvez votre numéro local : https://us06web.zoom.us/u/kdncHRutIx -- Dr Visotheary UNG Institut de Systématique, Evolution, Biodiversité ISYEB UMR 7205 CNRS MNHN SU EPHE UA CP 39, 18 rue Buffon, 75005 Paris tél: +33.(0)1.40.79.80.67 Cellule BIRD/Equipe Homologies Assistante de prévention coordinatrice UMR Chargée de mission Expertise-Valorisation UMR Référente Egalite-Parité-Lutte contre les discriminations UFR TEB Secrétaire du Biodiversity Information Standards (www.tdwg.org) /Sauf urgence explicite, ce mail n'appelle ni traitement ni réponse avant 08h00, en soirée, pendant le week-end //ou en période de congés. //Unless there is an explicit emergency, this email does not call for processing or response before 8:00 a.m., in the evening, during the weekend or during holidays./ <https://isyeb.mnhn.fr/fr/cellule-de-valorisation-informatique-bird-2740>

1 0

Invitation: Review MOU for Sustainable DwC-MIxS Interoperability TG - mar. 14 déc. 2021 8pm - 9pm (CET) (dwc-mixs@lists.tdwg.org)
by ung.visotheary＠gmail.com 07 Dec '21

07 Dec '21

Vous êtes invité(e) à cet événement. Titre : Review MOU for Sustainable DwC-MIxS Interoperability TG TDWG Executive vous invite à une réunion Zoom planifiée. Participer à la réunion Zoom https://us06web.zoom.us/j/81587155211?pwd=NU01UG5RVUlzdDA4VktQeXZadjBKZz09 ID de réunion : 815 8715 5211 Code secret : 859072 Une seule touche sur l’appareil mobile +13017158592,,81587155211#,,,,*859072# États-Unis (Washington DC) +13126266799,,81587155211#,,,,*859072# États-Unis (Chicago) Composez un numéro en fonction de votre emplacement +1 301 715 8592 États-Unis (Washington DC) +1 312 626 6799 États-Unis (Chicago) +1 346 248 7799 États-Unis (Houston) +1 669 900 6833 États-Unis (San Jose) +1 929 205 6099 États-Unis (New York) +1 253 215 8782 États-Unis (Tacoma) ID de réunion : 815 8715 5211 Code secret : 859072 Trouvez votre numéro local : https://us06web.zoom.us/u/kdncHRutIx Date : mar. 14 déc. 2021 8pm – 9pm Heure d’Europe centrale - Paris Lieu : https://us06web.zoom.us/j/81587155211?pwd=NU01UG5RVUlzdDA4VktQeXZadjBKZz09 Agenda : dwc-mixs(a)lists.tdwg.org Participants : * ung.visotheary(a)gmail.com- organisateur * wdduncan(a)gmail.com * stanblum(a)gmail.com * pier.buttigieg(a)awi.de * steve.baskauf(a)vanderbilt.edu * mergen.patricia(a)gmail.com * n.nicolson(a)kew.org * james.macklin(a)gmail.com * dwc-mixs(a)lists.tdwg.org * scott.tighe(a)uvm.edu * tuco(a)berkeley.edu * dlpaul(a)illinois.edu * raissa.meyer(a)awi.de Détails de l'événement : https://calendar.google.com/calendar/event?action=VIEW&eid=b3Vqcjhpc3YyaTFw… Invitation de Google Agenda : https://calendar.google.com/calendar/ Vous recevez ce message à l'adresse dwc-mixs(a)lists.tdwg.org, car vous participez à cet événement. Refusez cet événement pour ne plus recevoir de notifications le concernant. Vous avez également la possibilité de créer un compte Google à l'adresse https://calendar.google.com/calendar/ et de définir vous-même les paramètres de notification pour l'intégralité de votre agenda. En transférant cette invitation, vous risquez d'autoriser tous les destinataires à envoyer une réponse à l'organisateur et à être ajoutés à la liste des invités, à inviter d'autres personnes indépendamment de l'état de l'invitation qu'ils ont reçue, ou à modifier votre réponse à l'invitation. Pour plus d'informations, consultez la page https://support.google.com/calendar/answer/37135#forwarding

1 0

Report - Sustainable DwC-MIxS Interoperability TG
by Raissa Meyer 03 Dec '21

03 Dec '21

Dear TDWG EC and Secretariat, Dear GSC board and Secretariat, We would like to present the outputs of the Sustainable DwC-MIxS Interoperability Task Group convened under GBWG [1; https://www.tdwg.org/community/gbwg/MIxS/ <https://www.tdwg.org/community/gbwg/MIxS/>]. The final draft of our report is attached to this email and is also viewable here: https://tinyurl.com/a9khfya6 <https://tinyurl.com/a9khfya6> In this report, we include a proposed MoU <https://docs.google.com/document/d/1PMduF-42m0CqtCsgczG-MajcKLkzkj6BRBs2DVy…> between TDWG and the GSC to ensure sustainable interoperability between DwC and MIxS. We hope that you will consider our TG report/outputs in your upcoming meetings and will provide feedback where necessary, which will be appended to the report for consideration of future TGs. In particular, feedback on the MoU supporting its adoption would be valuable to the community. Please let us know if you have any questions or concerns. Yours sincerely, Raïssa Meyer and Pier Luigi Buttigieg [1] This TG brought together experts from the Biodiversity Information Standards (TDWG) and the Genomic Standards Consortium (GSC) - alongside key external stakeholders (OBIS, GBIF, Pensoft, etc.) - to develop an approach to promote sustainable interoperability between the Minimum Information about any (x) Sequence (MIxS; maintained by the GSC) and the Darwin Core (DwC; maintained by TDWG) specifications. We 1) generated, and internally reviewed, a fine-grained mapping of DwC to MIxS in a standard format (SSSOM), 2) implemented new extensions to DwC, and 3) developed recommendations on how to expand on and sustain these. We have also identified areas of concern, which are in need of further attention and follow-up TGs. (https://www.tdwg.org/community/gbwg/MIxS/ <https://www.tdwg.org/community/gbwg/MIxS/>) -- https://orcid.org/0000-0002-2996-719X

7 13

Use of the MIxS-based DWC extension
by Thomas Stjernegaard Jeppesen 30 Sep '21

30 Sep '21

Hi All I just wanted to let you know that GBIF now starts to see incoming data using the MIxS-based DNA derived data extension for DwC. A few examples: 1. https://www.gbif.org/dataset/e0b59ee7-19ae-4eb0-9217-33317fb50d47 * Example occurrence record: https://www.gbif.org/occurrence/3357191905 (scroll to the bottom to see the MIxS / DNA data) 2. https://www.gbif.org/dataset/9e29a2fe-d780-48a8-a93f-9ce041f9202f * Example occurrence record: https://www.gbif.org/occurrence/3356905303 1. https://www.gbif.org/dataset/040c5662-da76-4782-a48e-cdea1892d14c * Example occurrence: https://www.gbif.org/occurrence/2979635351 Best wishes Thomas Stjernegaard Jeppesen Web developer orcid.org/0000-0003-1691-239X<https://orcid.org/0000-0003-1691-239X> Global Biodiversity Information Facility Universitetsparken 15, 2100 København Ø www.gbif.org<https://www.gbif.org/> | www.catalogueoflife.org/<https://www.catalogueoflife.org/>

4 4

DwC-MIxS TG report wrap-up and publishing
by Raissa Meyer 24 Aug '21

24 Aug '21

Dear all, We have just sent our TG report to the GSC board and TDWG EC! Congratulations! As previously discussed, one way of sharing the outputs produced and approach used, would be by publishing the TG report through the BISS journal <https://biss.pensoft.net/journals.php?journal_name=biss>. Please let us know if you would support this as a next step, and we will explore this option further. For the time being, we have created a read only copy of the report [1], to disseminate to interested parties. Following last week’s wrap up meeting, we’d again like to thank you all for your exceptional work on this project. The diversity of views and needs we synthesised led to a very robust set of recommendations in a remarkably short time. We also all learned from one another, and hopefully will continue to support one another’s efforts. It was an honour, and a great pleasure working with all of you. Thank you for your time and focus in collaboratively addressing the complex issue of sustainable and scalable standards mapping. We hope that our work will lay a cornerstone for future efforts. Thank you again, Raïssa and Pier Luigi [1] https://docs.google.com/document/d/1PMduF-42m0CqtCsgczG-MajcKLkzkj6BRBs2DVy… <https://docs.google.com/document/d/1PMduF-42m0CqtCsgczG-MajcKLkzkj6BRBs2DVy…> -- https://orcid.org/0000-0002-2996-719X

7 6

DwC-MIxS Interoperability TG wrap-up
by Raissa Meyer 02 Aug '21

02 Aug '21

Dear all, As our TG discussions are generally done, we suggest to skip the meeting tomorrow. However, please take this as a last opportunity to review the document and add any comments or final changes. By the end of this week we will finalise it and send it to the relevant parties within TDWG and the GSC for review. Following our usual rhythm, we would then invite you to our wrap-up meeting in two weeks (2021-08-17, 15:00 UTC), using our regular zoom room. Thank you and best regards, Raïssa and Pier — https://orcid.org/0000-0002-2996-719X

1 0

Early access to our report - objections?
by Pier Luigi Buttigieg 22 Jul '21

22 Jul '21

Dear all, Now that the final review period has concluded, I'd like to know if there are any objections to sharing a read-only version of the document's current form to those that have shown an early interest (e.g. the Marine and Biological Data Clusters in ESIP). We'll note that this is a pre-release version, and replace it with the DOI of the published report when we release that. Best, Pier Luigi -- https://orcid.org/0000-0002-4366-3088

4 3

DwC-MIxS TG meeting summary
by Raissa Meyer 19 Jul '21

19 Jul '21

Dear all, Many thanks for this week’s meeting! We are now reaching the final phase of our TG activities, with the remaining task being to finish the TG report <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> [1]. Pier and I have reviewed most of the current version and addressed open comments and suggestions within. Please review the updated document <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> [1] until next Monday (2021-07-19), so that we can conclude that chapter and send it off to GSC and TDWG before summer vacation time fully hits us. From our perspective, there is no immediate need to meet next week (2021-07-20, 15:00 UTC), however, we would like to offer the option of discussing any open questions, and will thus have the usual zoom room open regardless. If there is anything that you would like to discuss with the whole group, please reply to this email to let us and the other members know. Below, please find a section with a summary of our last meeting. == SUMMARY == For extended notes please see our running notes document <https://docs.google.com/document/d/1569Q7D0Tm03vRQmu2L2WykI63Uk8Aa20GJBC7kU…>. We took the opportunity of this meeting to discuss remaining issues on our issue tracker: License associated with the mapping outputs of this TG #67 <https://github.com/tdwg/gbwg/issues/67> consensus to release it under CC-0 Updates to the SSSOM mapping header #69 <https://github.com/tdwg/gbwg/issues/69> & #68 <https://github.com/tdwg/gbwg/issues/68> consensus to add contributor names separately consensus to remove quotes Noting a new MIxS V6 term #66 <https://github.com/tdwg/gbwg/issues/66> consensus not to include any new MIxS V6 terms in this release (which is a mapping of DwC to MIxS V5) Check-in on #65 <https://github.com/tdwg/gbwg/issues/65> “Create example RDF from DwC-A” no activity was noted, and as it is not necessary for our TG outputs, no activity is needed Further, we continued writing and reviewing the TG report. The main sections of development were: Note on Terminology <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> Recommendations for semantic and syntactic alignment <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> Conclusion and outlook <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> Best regards, Raïssa and Pier [1] TG report https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi… <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> [2] Issue 67: SSSOM license https://github.com/tdwg/gbwg/issues/67 <https://github.com/tdwg/gbwg/issues/67> [3] Issue 69: SSSOM header contributors https://github.com/tdwg/gbwg/issues/69 <https://github.com/tdwg/gbwg/issues/69> [4] Issue 68: SSSOM header quotes https://github.com/tdwg/gbwg/issues/68 <https://github.com/tdwg/gbwg/issues/68> [5] Issue 66: New MIxS V6 term https://github.com/tdwg/gbwg/issues/66 <https://github.com/tdwg/gbwg/issues/66> [6] Issue 65: Example RDF from DwC https://github.com/tdwg/gbwg/issues/65 <https://github.com/tdwg/gbwg/issues/65> [7] TG report section: Note on Terminology: https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi… <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> [8] TG report section: Recommendations for semantic and syntactic alignment https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi… <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> [9] TG report section: Outlook https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi… <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> — https://orcid.org/0000-0002-2996-719X

1 1

DwC "picklist" extension to MIxS IRIs
by Pier Luigi Buttigieg 24 Jun '21

24 Jun '21

Dear TG, Dear Ramona (GSC CIG), Chris, Bill, In our DwC-MIxS mapping activity, we noted a practice to support the IPT to generate "picklists" (for drop-down menus etc) by adding extensions to IRIs. This was suggested as a means to link the values to keys in terminology-focused fields. You can see the link to the "picklists" in the tracker: https://github.com/tdwg/gbwg/tree/main/dwc-mixs/dwc#vocabularies An example is available in [1] and looks like: dc:URI='https://w3id.org/gensc/terms/MIXS:0000005/contigs' I'm not quite sure about this and would like your input. To me, it seems like a very strange way to modify an identifier *issued by another standards group* in order to help a tool generate dropdown menu. It essential creates a false impression that there's something standardised on the other end of that IRI that may or may not be the case. Best, Pier Luigi [1] https://github.com/tdwg/gbwg/blob/main/dwc-mixs/dwc/vocabulary/contam_scree… -- https://orcid.org/0000-0002-4366-3088

3 5

DwC-MIxS TG meeting follow-up and next steps
by Raissa Meyer 14 Jun '21

14 Jun '21

Dear all, Many thanks for last week’s meeting! Below, please find sections with a summary of our last meeting and next steps. == SUMMARY == For extended notes please see our running notes document [1]. We’ve taken the opportunity of this meeting to continue writing and reviewing the TG report [2]. The main sections of development were: Recommendations for using the SSSOM mapping matrix <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> Recommendations for many-to-one, many-to-many, one-to-many mappings <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> Recommendations for licensing information <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> Approach: Testing <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> Issues noted for further TGs: Controlled vocabularies in DwC to promote improved consistency and DwC-MIxS alignment <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> == NEXT STEPS == Continue to write and review the TG report. We’ll also reach out to individual members to request focused additions or review of certain sections in preparation of our next meeting, aiming to continuously advance the TG report. Best regards, Raïssa and Pier [1] Running notes document https://docs.google.com/document/d/1569Q7D0Tm03vRQmu2L2WykI63Uk8Aa20GJBC7kU… <https://docs.google.com/document/d/1569Q7D0Tm03vRQmu2L2WykI63Uk8Aa20GJBC7kU…> [2] TG report https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi… <https://docs.google.com/document/d/1zhb8m2nAahcWDdGtGm_z4Q8qqHbDibWRnPdfGFi…> — https://orcid.org/0000-0002-2996-719X

1 0