May 2021 - tdwg-humboldt - lists.tdwg.org

Humboldt Task Group Meeting Wed 26 May 2021, 08:00 EST
by Yanina Sica 19 May '21

19 May '21

Hi All, Thanks for a great meeting! Since the next terms follow the same logic discussed today, I was wondering if we could take a look at them before the next meeting to accelerate our discussion. - *original_HC_label* - distributional status - distributional status excluded - growth form - growth form excluded - size class (see github issue here: https://github.com/tdwg/hc/issues/10) - size class excluded (see github issue here: https://github.com/tdwg/hc/issues/10) For reference: - check the definitions of the original related terms in HC (see Vocabulary file <https://github.com/tdwg/hc/tree/main/vocabulary>) - revisit our discussion notes here <https://docs.google.com/document/d/10cvJl9nuVZIsfKJStA4DsqcNNfrtb8jfc-mUXck…> and the slides that capture some of our previous decisions here <https://docs.google.com/presentation/d/1cpOXOtZi71WUYSG2UG8zQ4FAmvd6gcKW83x…> (in particular slides 24-26) Cheers! Yanina V. Sica, PhD Data Manager | Map of Life Yale University pronouns: she/her/hers

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Humboldt Task Group Meeting Wed 19 May 2021, 08:00 EST
by Yanina Sica 18 May '21

18 May '21

Hi all, Just a friendly reminder that we will continue our discussion on Humbodlt terms tomorrow. For reference: - check the definitions of the original related terms in HC (see Vocabulary file <https://github.com/tdwg/hc/tree/main/vocabulary>) - revisit our discussion notes here <https://docs.google.com/document/d/10cvJl9nuVZIsfKJStA4DsqcNNfrtb8jfc-mUXck…> See you tomorrow! Yanina V. Sica, PhD Data Manager | Map of Life Yale University pronouns: she/her/hers

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Humboldt Task Group Meeting Wed 12 May 2021, 08:00 EST
by Yanina Sica 12 May '21

12 May '21

Hi all, As last week, tomorrow we will review Humbodlt terms related to temporal, spatial, and taxonomic scope and sampling methods. With those in mind we will then go back to the more complex terms (e.g. effort, completeness). For reference: - check the definitions of the original related terms in HC (see Vocabulary file <https://github.com/tdwg/hc/tree/main/vocabulary>) - revisit our discussion notes here <https://docs.google.com/document/d/10cvJl9nuVZIsfKJStA4DsqcNNfrtb8jfc-mUXck…> See you tomorrow! Yanina V. Sica, PhD Data Manager | Map of Life Yale University pronouns: she/her/hers

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Re: [tdwg-humboldt] tdwg-humboldt Digest, Vol 6, Issue 2
by Neil Cobb 11 May '21

11 May '21

John, Thanks, I either forgot about this pub/group or never knew about them. I will reach out to them, it would be great to have bee collaborators from Brazil as well as working on plant-pollinator interaction terms. Cheers, Neil Neil S. Cobb, Symbiota Collections of Arthropods Network (SCAN) <https://scan-bugs.org/portal/index.php> Biodiversity Outreach Network <https://www.bon-earth.org/> Northern Arizona University Flagstaff, AZ 86011 Neil.Cobb(a)nau.edu neilscobb(a)gmail.com (Mobile Office) 928-607-4075 Skype Name: neil_cobb Calendar: https://doodle.com/neilcobb Virtual Meeting: Contact for Zoom URL ORCID https://orcid.org/0000-0002-6155-9444 On Fri, May 7, 2021 at 5:00 AM <tdwg-humboldt-request(a)lists.tdwg.org> wrote: > Send tdwg-humboldt mailing list submissions to > tdwg-humboldt(a)lists.tdwg.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.tdwg.org/mailman/listinfo/tdwg-humboldt > or, via email, send a message with subject or body 'help' to > tdwg-humboldt-request(a)lists.tdwg.org > > You can reach the person managing the list at > tdwg-humboldt-owner(a)lists.tdwg.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of tdwg-humboldt digest..." > > > Today's Topics: > > 1. Re: Humboldt Core use cases (John Wieczorek) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Fri, 7 May 2021 00:37:13 -0300 > From: John Wieczorek <tuco(a)berkeley.edu> > To: Humboldt Core TG <tdwg-humboldt(a)lists.tdwg.org> > Subject: Re: [tdwg-humboldt] Humboldt Core use cases > Message-ID: > < > CAHwKGGdoXZq7FvOnwFoq2HHYU289+mJ9VHwqOfjGf1zkii0mHQ(a)mail.gmail.com> > Content-Type: text/plain; charset="utf-8" > > Hi Neil, > > I think demonstrating a case for inventories with interactions would be > particularly compelling. Working with the Plant-Pollinator Interactions > Group in Brazil (https://github.com/BioComp-USP/rebipp-data-standard) has > shown that there are many core (pun partially intended) issues in common in > terms (another pun?) of shared hierarchical Event structuring. > > Cheers, > > John > > On Wed, Apr 28, 2021 at 4:09 AM Neil Stanley Cobb <Neil.Cobb(a)nau.edu> > wrote: > > > Hi, > > > > > > > > I have popped into a couple of working group meetings in the past three > > weeks. I am not sure I can attend meetings on a regular basis. My > primary > > interest is two-fold; 1) want to extend SCAN > > <https://scan-bugs.org/portal/index.php>?s ability to incorporate fields > > from arthropod projects that incorporate inventory/monitoring that DwC > does > > not provide. The biggest use case involves bee/pollinator data sets. We > are > > starting to incorporate files from ecological studies on > bees/pollinators. > > All of the cases so far would benefit from adopting a HC set of fields, > > however the form (e.g., DwC extensions). I am also interested in > monitoring > > projects and pitfall data (see below); and 2) I do want to provide > feedback > > to make HC as robust and effective as possible. > > > > > > > > *Bee/Pollinator Projects* > > > https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=275 > Drought > > and Habitat Fragmentation on Native Bee Assemblages > > > https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=270 > Plant?pollinator > > community assembly across wildfire gradients > > > https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=272 > > Predicting changes in bee assemblages following state transitions > > > https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=278 > > Maine State Museum - Brianne Du Clos Pollinator Study *Mosquito > > Monitoring (i.e., repeated measures)* > > > https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=181 > > VectorBase (Bioinformatics Resource for Invertebrate Vectors of Human > > Pathogens) Ground-Dwelling Arthropods (pitfalls) > > > > Scores of data in SCAN were generated from pitfall studies. Currently, > > there is no way to compare across datasets (i.e. define ?effort? so > numbers > > are expressed in common currency). Sand Brantley is the only publication > I > > know where effort was defined in order to compare spider assemblages from > > two separate elevation gradients (attached). We might be able to > > retroactively populate ?effort? metrics for over a million records and a > > standard to guide the process would be very helpful. > > > > > > > > > > > > Cheers, > > > > Neil > > > > > > > > > > > > > > > > Neil S. Cobb, > > > > Symbiota Collections of Arthropods Network (SCAN) > > <https://scan-bugs.org/portal/index.php> > > > > Biodiversity Outreach Network <https://www.bon-earth.org/> > > > > > > > > Northern Arizona University Flagstaff, AZ 86011 > > > > Neil.Cobb(a)nau.edu neilscobb(a)gmail.com > > > > > > (Mobile Office) 928-607-4075 > > > > Virtual Office: https://us02web.zoom.us/j/82515787249 > > > > ORCID https://orcid.org/0000-0002-6155-9444 > > > > > > > > Do you know where all 200,000 North American arthropod species live? > > > > > > > > > > _______________________________________________ > > tdwg-humboldt mailing list > > tdwg-humboldt(a)lists.tdwg.org > > http://lists.tdwg.org/mailman/listinfo/tdwg-humboldt > > >

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Humboldt Core use cases
by Neil Stanley Cobb 06 May '21

06 May '21

Hi, I have popped into a couple of working group meetings in the past three weeks. I am not sure I can attend meetings on a regular basis. My primary interest is two-fold; 1) want to extend SCAN<https://scan-bugs.org/portal/index.php>'s ability to incorporate fields from arthropod projects that incorporate inventory/monitoring that DwC does not provide. The biggest use case involves bee/pollinator data sets. We are starting to incorporate files from ecological studies on bees/pollinators. All of the cases so far would benefit from adopting a HC set of fields, however the form (e.g., DwC extensions). I am also interested in monitoring projects and pitfall data (see below); and 2) I do want to provide feedback to make HC as robust and effective as possible. Bee/Pollinator Projects https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=275 Drought and Habitat Fragmentation on Native Bee Assemblages https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=270 Plant-pollinator community assembly across wildfire gradients https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=272 Predicting changes in bee assemblages following state transitions https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=278 Maine State Museum - Brianne Du Clos Pollinator Study Mosquito Monitoring (i.e., repeated measures) https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=181 VectorBase (Bioinformatics Resource for Invertebrate Vectors of Human Pathogens) Ground-Dwelling Arthropods (pitfalls) Scores of data in SCAN were generated from pitfall studies. Currently, there is no way to compare across datasets (i.e. define "effort" so numbers are expressed in common currency). Sand Brantley is the only publication I know where effort was defined in order to compare spider assemblages from two separate elevation gradients (attached). We might be able to retroactively populate "effort" metrics for over a million records and a standard to guide the process would be very helpful. Cheers, Neil Neil S. Cobb, Symbiota Collections of Arthropods Network (SCAN)<https://scan-bugs.org/portal/index.php> Biodiversity Outreach Network<https://www.bon-earth.org/> Northern Arizona University Flagstaff, AZ 86011 Neil.Cobb(a)nau.edu<mailto:Neil.Cobb@nau.edu> neilscobb(a)gmail.com (Mobile Office) 928-607-4075 Virtual Office: https://us02web.zoom.us/j/82515787249 ORCID https://orcid.org/0000-0002-6155-9444 Do you know where all 200,000 North American arthropod species live?

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Humboldt Task Group Meeting Wed 5 May 2021, 08:00 EST
by Yanina Sica 04 May '21

04 May '21

Hi all, As per our discussion last week we will do a review of Humbodlt terms related to temporal, spatial, and taxonomic scope and sampling methods. With those in mind we will then go back to the more complex terms (e.g. effort, completeness). For reference: - check the definitions of the original related terms in HC (see Vocabulary file <https://github.com/tdwg/hc/tree/main/vocabulary>) - revisit our discussion notes here <https://docs.google.com/document/d/10cvJl9nuVZIsfKJStA4DsqcNNfrtb8jfc-mUXck…> See you tomorrow! Yanina V. Sica, PhD Data Manager | Map of Life Yale University pronouns: she/her/hers

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