- tdwg-humboldt - lists.tdwg.org

Will not be able to make it today
by Yanina Sica 13 Mar '24

13 Mar '24

I am sorry team, I am still doing field work in Argentina and will not be able to make it to the meeting today. I hope you have some nice data discussions! Cheers, Yani

2 1

Zoom link?
by Anahita Kazem 06 Mar '24

06 Mar '24

Hi all, Could someone please remind me of the link we use for the meeting? I cannot find it... Thanks! Ani ------------------------------------------------------------------------ Dr Anahita JN Kazem Data Steward & Biodiversity Informatics Scientist Data & Code Unit (iBID / iBON) German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig |www.idiv.de Department of Informatics Friedrich-Schiller-University Jena anahita.kazem(a)idiv.de | Puschstraße 4 | D-04103 Leipzig | Germany

1 0

Meeting this week - Discussion on mapped datasets
by Yanina Sica 05 Mar '24

05 Mar '24

Hi all, In our previous meeting we decided to use this week to discuss the datasets that have been mapped with Humboldt Extension. This exercise serves 2 purposes: - comply with the TDWG Task Group charter where we promised to publish 7 datasets using Humboldt Extension. - have more familiarity with the different hierarchies and sampling designs Ani, Zach, Wesley, Kate and Ming will talk about their datasets and their challenges. Zach and Wesley shared their mapping exercise with a lot of information quite recently. As some of you know, I will be on holiday this week and will not be able to attend the meeting. Have fun and enjoy....these meetings are coming to an end quite soon! All the best! Yani <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> Virus-free.www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

1 0

Meeting today
by Anahita Kazem 28 Feb '24

28 Feb '24

Dear all, I have just realised that today is Wednesday... I am at an all-day workshop and unfortunately the lunchbreak is not at the same time as our usual meeting slot, so I'm afraid I can't join. See you next week I hope, Ani ------------------------------------------------------------------------ Dr Anahita JN Kazem Data Steward & Biodiversity Informatics Scientist Data & Code Unit (iBID / iBON) German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig |www.idiv.de Department of Informatics Friedrich-Schiller-University Jena anahita.kazem(a)idiv.de | Puschstraße 4 | D-04103 Leipzig | Germany

5 4

Re: [tdwg-humboldt] Seeking ratification of the Humboldt Extension for ecological inventories
by Yanina Sica 28 Feb '24

28 Feb '24

Thank you so much, Theary and all Executive Committee members! I am overjoyed to receive such incredible news. This accomplishment truly reflects the outstanding teamwork involved. I am not only immensely proud of this group's achievement, but also deeply grateful to every member of the task group who, despite their numerous responsibilities, devoted nearly 3 years to this project. I am filled with gratitude and humility. Thanks again, Yanina Sica <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> Virus-free.www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> On Wed, Feb 28, 2024 at 12:08 PM Visotheary <visotheary.ung(a)mnhn.fr> wrote: > Dear John and all, > > On behalf of the Executive committee, I am very glad to inform you that > the Executive committee has endorsed the ratification of the Humboldt > Extension for ecological inventories. > Congratulations on the huge work and achievements! > Thank you very much for your involment in improving TDWG standards. > > All the very best, > Theary for the Executive Committee > > Le 14/02/2024 à 20:02, John Wieczorek a écrit : > > Dear Executive Committee, > > As convenor and on behalf of the Darwin Core Maintenance Interest Group it > is my pleasure to announce that the Humboldt Extension Task Group has > completed and presents the results of the tasks in its charter ( > https://www.tdwg.org/community/osr/humboldt-extension/) The tasks > included a public review, which went through two rounds of changes and > resulted in useful updates to the originally proposed vocabulary > enhancement to Darwin Core. The result is a clear set of terms, their > definitions, usage comments, and examples and a formal > controlled vocabulary for the new term eco:taxonCompletenessReported. The > entire history of the review process ( > https://github.com/tdwg/hc/issues?q=is%3Aissue) and the resulting changes > can be found in the TDWG Humboldt Extension GitHub repository ( > https://github.com/tdwg/hc) > > In addition to the review, the GitHub repository and associated documents > contain the necessary documentation to comply with the Vocabulary > Maintenance Standard (https://www.tdwg.org/standards/vms/) The Landing > page for the Extension (https://eco.tdwg.org/) provides links to all > relevent documentation, including the normative "Humboldt Extension > Vocabulary List of Terms" document (https://eco.tdwg.org/list/) a "Usage > Guide" (non-normative, > https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCz…, > which will be even further developed in collaboration with GBIF), the > "Implementation Experience Report" ( > https://eco.tdwg.org/humboldt_extension_implementation_experience_report.pd… > "isLeastSpecificTargetCategoryQuantityInclusive Guidelines" ( > https://eco.tdwg.org/inclusive/),documentation entitled "Properties of > hierarchical events in the Humboldt Extension for Ecological Inventories" ( > https://eco.tdwg.org/hierarchy/) and the "Quick Reference Guide" ( > https://eco.tdwg.org/terms/) following the pattern of human-friendly > documentation for the Darwin Core standard. > > Following the Vocabulary Maintenance Standard, by endorsing this proposal > and forwarding it to you, we have entered into the Executive Committee > Decision Phase. Once ratification is complete, the highlighted Note at the > beginning of the landing page will be removed to reflect the new ratified > status of the Vocabulary Enhancement. > > I want to add a personal note of appreciation for the monumental effort > embodied in this submission. The Task Group was extremely effective, and > was under the constant capable leadership of Yanina Sica. It was a > fantastic job by all involved. I look forward to seeing the immense impact > it promises to have on sharing ecological biodiversity data. > > Cheers, > > John > > > -- > > Dr Visotheary UNG > Institut de Systématique, Evolution, Biodiversité > ISYEB UMR 7205 CNRS MNHN SU EPHE UA > CP 39, 18 rue Buffon, 75005 Paris > tél: +33.(0)1.40.79.80.67 > Cellule BIRD/Equipe Homologies > Assistante de prévention coordinatrice UMR > Chargée de mission Expertise-Valorisation UMR > Référente Egalite-Parité-Lutte contre les discriminations UFR TEB > Secrétaire du Biodiversity Information Standards (www.tdwg.org) > > *Sauf urgence explicite, ce mail n'appelle ni traitement ni réponse avant > 08h00, en soirée, pendant le week-end ou en période de congés. Unless there > is an explicit emergency, this email does not call for processing or > response before 8:00 a.m., in the evening, during the weekend or during > holidays.* > >

2 1

meeting today
by Yanina Sica 21 Feb '24

21 Feb '24

Dear Humboldties, I am very sorry I will not be able to celebrate the submission of the extension for ratification. I am currently on a train back to Germany with a poor internet connection so I will not join the meeting today. Some notes from my end that would be nice if you can discuss today: - the executive board meeting will be next Tuesday so we will probably have news on the ratification by then. Let's aim for a big meeting on Wed next week to celebrate! - Wesley has shared a subset of eBird data mapped with the Humboldt extension. Zach and Ani are still working on 2 more datasets. Once those are finished we can start the process of ending the Task Group. - Many of you have received an email from Lien Reyserhove about a new task group (or activating an old one) on IAS management and vocabulary (which I think could be expanded to include disturbances and other habitat modifications). She is organizing a meeting so let me know if you did not receive her email and you are interested in participating. - Work on the documentation and HE user guide is led by Kate (and GBIF more generally). Please Kate, let us know if you need anything from us. - Rob S. and I started drafting the HE paper. It is not too advanced and we are still working on the overview or key messages but if you want to take a look and/or collaborate, this is the document: https://docs.google.com/document/d/171Blq1BDza_psrIQtBH-USIBzRuJAz-KQ4vS-xY… Have a great meeting, See you next week, Yani <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> Virus-free.www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

5 4

Re: [tdwg-humboldt] Seeking ratification of the Humboldt Extension for ecological inventories
by Yanina Sica 15 Feb '24

15 Feb '24

Wow!!! This is amazing!! Thanks for pushing this forward John!! And thanks for the nice words, this was indeed an amazing group effort! Yani On Wed, 14 Feb 2024 at 21:06, Wesley M. Hochachka <wmh6(a)cornell.edu> wrote: > Thank you John! > > Wow...and you even were able to start off the ratification process on a > travel day! I'm looking forward to being able to think entirely about > implementation, getter a richer representation of eBird's data into GBIF. > > Wesley > > > > > ******************* > Wesley Hochachka > Senior Research Associate > Cornell Lab of Ornithology > ph. (607) 254-2484 > ******************* > ------------------------------ > *From:* Baskauf, Steven James <steve.baskauf(a)Vanderbilt.Edu> > *Sent:* Wednesday, February 14, 2024 14:39 > *To:* John Wieczorek <gtuco.btuco(a)gmail.com> > *Cc:* Humboldt Core TG <tdwg-humboldt(a)lists.tdwg.org>; Wesley M. > Hochachka <wmh6(a)cornell.edu>; Yanina Sica <yanina.sica(a)gmail.com> > *Subject:* Re: Seeking ratification of the Humboldt Extension for > ecological inventories > > > Woo hoo!!! Thanks, John! > > Steve > > > > -- > > Steven J. Baskauf, Ph.D. he/him/his > > Data Science and Data Curation Specialist / Librarian III > > Digital Lab, Jean & Alexander Heard Libraries, Vanderbilt University > > Nashville, TN 37235, USA > > > > https://baskauf.github.io/ > > > > > > *From: *John Wieczorek <gtuco.btuco(a)gmail.com> > *Date: *Wednesday, February 14, 2024 at 1:08 PM > *To: *TDWG Exec <xcom(a)tdwg.org> > *Cc: *Humboldt Core TG <tdwg-humboldt(a)lists.tdwg.org>, Wesley M. > Hochachka <wmh6(a)cornell.edu>, Yanina Sica <yanina.sica(a)gmail.com>, > Baskauf, Steven James <steve.baskauf(a)vanderbilt.edu> > *Subject: *Seeking ratification of the Humboldt Extension for ecological > inventories > > Dear Executive Committee, > > As convenor and on behalf of the Darwin Core Maintenance Interest Group it > is my pleasure to announce that the Humboldt Extension Task Group has > completed and presents the results of the tasks in its charter ( > https://www.tdwg.org/community/osr/humboldt-extension/) The tasks > included a public review, which went through two rounds of changes and > resulted in useful updates to the originally proposed vocabulary > enhancement to Darwin Core. The result is a clear set of terms, their > definitions, usage comments, and examples and a formal > controlled vocabulary for the new term eco:taxonCompletenessReported. The > entire history of the review process ( > https://github.com/tdwg/hc/issues?q=is%3Aissue) and the resulting changes > can be found in the TDWG Humboldt Extension GitHub repository ( > https://github.com/tdwg/hc) > > > > In addition to the review, the GitHub repository and associated documents > contain the necessary documentation to comply with the Vocabulary > Maintenance Standard (https://www.tdwg.org/standards/vms/) The Landing > page for the Extension (https://eco.tdwg.org/) provides links to all > relevent documentation, including the normative "Humboldt Extension > Vocabulary List of Terms" document (https://eco.tdwg.org/list/) a "Usage > Guide" (non-normative, > https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCz…, > which will be even further developed in collaboration with GBIF), the > "Implementation Experience Report" ( > https://eco.tdwg.org/humboldt_extension_implementation_experience_report.pd… > "isLeastSpecificTargetCategoryQuantityInclusive Guidelines" ( > https://eco.tdwg.org/inclusive/),documentation entitled "Properties of > hierarchical events in the Humboldt Extension for Ecological Inventories" ( > https://eco.tdwg.org/hierarchy/) and the "Quick Reference Guide" ( > https://eco.tdwg.org/terms/) following the pattern of human-friendly > documentation for the Darwin Core standard. > > > > Following the Vocabulary Maintenance Standard, by endorsing this proposal > and forwarding it to you, we have entered into the Executive Committee > Decision Phase. Once ratification is complete, the highlighted Note at the > beginning of the landing page will be removed to reflect the new ratified > status of the Vocabulary Enhancement. > > > > I want to add a personal note of appreciation for the monumental effort > embodied in this submission. The Task Group was extremely effective, and > was under the constant capable leadership of Yanina Sica. It was a > fantastic job by all involved. I look forward to seeing the immense impact > it promises to have on sharing ecological biodiversity data. > > > > Cheers, > > > > John > > >

5 4

Seeking ratification of the Humboldt Extension for ecological inventories
by John Wieczorek 14 Feb '24

14 Feb '24

Dear Executive Committee, As convenor and on behalf of the Darwin Core Maintenance Interest Group it is my pleasure to announce that the Humboldt Extension Task Group has completed and presents the results of the tasks in its charter ( https://www.tdwg.org/community/osr/humboldt-extension/) The tasks included a public review, which went through two rounds of changes and resulted in useful updates to the originally proposed vocabulary enhancement to Darwin Core. The result is a clear set of terms, their definitions, usage comments, and examples and a formal controlled vocabulary for the new term eco:taxonCompletenessReported. The entire history of the review process ( https://github.com/tdwg/hc/issues?q=is%3Aissue) and the resulting changes can be found in the TDWG Humboldt Extension GitHub repository ( https://github.com/tdwg/hc) In addition to the review, the GitHub repository and associated documents contain the necessary documentation to comply with the Vocabulary Maintenance Standard (https://www.tdwg.org/standards/vms/) The Landing page for the Extension (https://eco.tdwg.org/) provides links to all relevent documentation, including the normative "Humboldt Extension Vocabulary List of Terms" document (https://eco.tdwg.org/list/) a "Usage Guide" (non-normative, https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCz…, which will be even further developed in collaboration with GBIF), the "Implementation Experience Report" ( https://eco.tdwg.org/humboldt_extension_implementation_experience_report.pd… "isLeastSpecificTargetCategoryQuantityInclusive Guidelines" ( https://eco.tdwg.org/inclusive/),documentation entitled "Properties of hierarchical events in the Humboldt Extension for Ecological Inventories" ( https://eco.tdwg.org/hierarchy/) and the "Quick Reference Guide" ( https://eco.tdwg.org/terms/) following the pattern of human-friendly documentation for the Darwin Core standard. Following the Vocabulary Maintenance Standard, by endorsing this proposal and forwarding it to you, we have entered into the Executive Committee Decision Phase. Once ratification is complete, the highlighted Note at the beginning of the landing page will be removed to reflect the new ratified status of the Vocabulary Enhancement. I want to add a personal note of appreciation for the monumental effort embodied in this submission. The Task Group was extremely effective, and was under the constant capable leadership of Yanina Sica. It was a fantastic job by all involved. I look forward to seeing the immense impact it promises to have on sharing ecological biodiversity data. Cheers, John

3 2

meeting this week?
by Yanina Sica 03 Feb '24

03 Feb '24

Dear all, I propose we skip our meeting this week and keep working on all the tasks that are happening in the background. I think it is easy to catch up on these via email but please let me know if there is any topic you would like to discuss with the whole team then we can certainly meet on Wed. Ongoing tasks: - *ratification;* Steve has generated the new list of terms and John has switched the status to "Process - prepare for executive review". I need to revise the supporting documents. - *Humboldt Task Group deliverable*; Zach, Ani and Wesley are mapping subsets of their data with Humboldt extension so we can have at least 5 published examples. Please let us know if this is moving forward or if you need some help *- Humboldt documentation; *GBIF, led by Kate, will take over the user guide and make it much fancier! - *Humboldt paper*; Rob S volunteered to start writing the overview with the main ideas for the paper. Please let us know if this is moving forward or if you need some help. Unless somebody would like to discuss something this Wed, we will meet on Wed 7th. Let me know what you think... Best, Yani Yani <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> Virus-free.www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

4 5

Humboldt meeting this week
by Yanina Sica 24 Jan '24

24 Jan '24

Dear all, Everything seems to be going smoothly regarding *ratification;* Steve has generated the new list of terms and John has switched the status to "Process - prepare for executive review". We should get ready to dissolve our *Humboldt Task Group*; the last deliverables are 7 published datasets using Humboldt. Zach, Ani and Wesley are mapping subsets of their data with Humboldt extension so we can have at least 5 examples. *TDWG Working Group meetings* are coming up, from February 19-22 Task Groups are encouraged to meet more openly (zoom link from TDWG) to provide an opportunity for community members to learn more about what your group is doing and find out how they can participate. We need to decide if we want to do this. Our typical meeting time is not available but we could meet the same day at 13:00 UTC (one hour later). If we decide to meet in this format we should expect new people to join so we should socialize/publicize the extension. Not sure if it is worth it though. Last week we decided that we would use our *next meeting* to discuss: - ideas for potential new Task Groups (e.g., development of vocabularies for protocols/methods, development of vocabulary or extension for disturbance/management/etc.) - advances on the Humbodlt paper, Rob S volunteered to start writing the overview with the main ideas for the paper. Hope everybody is well, see you soon, Yani <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> Virus-free.www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

2 2