[Tdwg-guid] Zoobank LSID Service

Sally Hinchcliffe S.Hinchcliffe at kew.org
Fri Sep 22 13:49:05 CEST 2006 

Hi

I'm attaching a copy of an RDF file of IPNI data which is in RDF/TCS. 
(I thought it it was on the wiki but now I can't find it) which 
covers all ranks and various examples (records with basionyms, 
records with types etc.)

If you look on the wiki there is also information about our LSID 
server. We've not been working on it for a while so it's pretty much 
in the state we left it after the GUIDs workshop. Over the next few 
weeks we hope to get back going with it and update the wiki 
particularly with the details of how we handle versioning. There are 
also some notes on the wiki about things I had problems with with the 
version of TCS/RDF that Roger had circulated. I don't know if it's 
been changed since ...

HTH

Sally



> Hi everyone,
> 
> I am in the process of putting together the LSID service component of
> Zoobank.org, after a few initial hiccups and difficulties I have a basic
> service up and running in the development environment.
> 
> Now I have arrived at the contentious issue of what data/metadata to
> return and in which flavour.
> 
> I have a few questions...
> 
> 1. What format should I return the metadata response in? From
> discussions with Roger it seems appropriate to go with RDF/TCS for the
> metadata reponse. Would this be a good way to go, and does anyone have
> any static examples of such a response?
> 
> 2. If a Data service were implemented, should the response simply be the
> LSID or the taxon name as we don't currently hold any holotype photos
> etc.
> 
> 2. Is there any standard scheme for LSID discovery? i.e. Would it be a
> good/bad idea to extend the LSID service to allow machine queries of
> LSIDs by taxon name rather than discovering them through the web
> interface?
> 
> Any comments and suggestions are very welcome!
> 
> Regards, Peter.
> 
> Peter Hollas MSc BSc(hons) (Peter.Hollas at thomson.com)
> Software Engineer / Systems Administrator
> Thomson Zoological
> Innovation Centre
> York Science Park
> Heslington
> York
> YO10 5DG
> 
> Tel: 01904-435113
> Fax: 01904-435114
> 
> _______________________________________________
> TDWG-GUID mailing list
> TDWG-GUID at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/mailman/listinfo/tdwg-guid

*** Sally Hinchcliffe
*** Computer section, Royal Botanic Gardens, Kew
*** tel: +44 (0)20 8332 5708
*** S.Hinchcliffe at rbgkew.org.uk


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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE rdf:RDF [ <!ENTITY tn 'http://tdwg.org/2006/03/12/TaxonNames/'>]>

<rdf:RDF xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:tn="http://tdwg.org/2006/03/12/TaxonNames/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
    
    <!-- example family (has an unlinked typifying name with non-standard format data)-->
    <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:30000959-2:1.1.2.1">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Amaryllidaceae J.St.-Hil.</dc:title>
		<dcterms:created>2004-01-20 00:00:00.0</dcterms:created>
		<dcterms:modified>2005-06-23 15:45:33.0</dcterms:modified>
		<tn:rankString>fam.</tn:rankString>
		<tn:nameComplete>Amaryllidaceae</tn:nameComplete>
		<tn:uninomial>Amaryllidaceae</tn:uninomial>
		<tn:authorship>J.St.-Hil.</tn:authorship>
		<tn:publishedIn>Expos. Fam. Nat. 1: 134. 1805 [Feb-Apr 1805]</tn:publishedIn>
		<tn:year>1805</tn:year>
		<tn:typifiedBy>
            <tn:NomenclaturalType>
				<dc:title>Amaryllis Linnaeus, nom. cons.</dc:title>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
    </tn:TaxonName>
    
    <!-- example infra family ... has a typifying name (unlinked) ...-->
    
     <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:312219-2:1.2">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>subtrib. Baccaridinae Less.</dc:title>
		<dcterms:created>2004-01-20 00:00:00.0</dcterms:created>
		<dcterms:modified>2005-08-19 15:59:04.0</dcterms:modified>
		<tn:rankString>subtrib.</tn:rankString>
		<tn:nameComplete>subtrib. Baccaridinae</tn:nameComplete>
		<tn:uninomial>Baccaridinae</tn:uninomial>
		<tn:authorship>Less.</tn:authorship>
		<tn:publishedIn>Linnaea 5: 145. 1830</tn:publishedIn>
		<tn:year>1830</tn:year>
		<tn:typifiedBy>
            <tn:NomenclaturalType>
				<dc:title>Baccharis L.</dc:title>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
    </tn:TaxonName>
  
    <!-- example genus. Has ex authorship -->
    <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:1786-1:1.1.2.1.1.1">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Dodonaea Plum. ex Adans.</dc:title>
		<dcterms:created>2003-07-02 00:00:00.0</dcterms:created>
		<dcterms:modified>2005-11-29 09:12:00.0</dcterms:modified>
		<tn:rankString>gen.</tn:rankString>
		<tn:nameComplete>Dodonaea</tn:nameComplete>
		<tn:uninomial>Dodonaea</tn:uninomial>
		<tn:authorship>Plum. ex Adans.</tn:authorship>
		<tn:publishedIn>Fam. ii. 342 (1763).</tn:publishedIn>
    </tn:TaxonName>
    
  <!-- example genus. Has a linked type name -->
      <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:60435733-2:1.1.2.1">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Renistipula Borhidi</dc:title>
		<dcterms:created>2004-09-07 06:46:08.0</dcterms:created>
		<dcterms:modified>2004-09-07 06:50:11.0</dcterms:modified>
		<tn:rankString>gen.</tn:rankString>
		<tn:nameComplete>Renistipula</tn:nameComplete>
		<tn:uninomial>Renistipula</tn:uninomial>
		<tn:authorship>Borhidi</tn:authorship>
		<tn:publishedIn>Acta Bot. Hung. 46(1-2): 122 (-123). 2004</tn:publishedIn>
		<tn:year>2004</tn:year>
 		<tn:typifiedBy>
            <tn:NomenclaturalType>
				<dc:title>Renistipula galeottii (Standl.) Borhidi</dc:title>
				<tn:typeName rdf:resource="urn:lsid:ipni.org:Names:60435735-2"/>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
   </tn:TaxonName>
 
  <!-- example infra genus. Is a validation of another ipni record -->
  <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:70029497-1:1.1">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Astrophytum subgen. Stigmatodactylus D.R.Hunt</dc:title>
		<dcterms:created>2003-10-15 08:31:34.0</dcterms:created>
		<dcterms:modified>2003-10-15 08:31:34.0</dcterms:modified>
		<tn:rankString>subgen.</tn:rankString>
		<tn:nameComplete>Astrophytum subgen. Stigmatodactylus</tn:nameComplete>
        <tn:genusPart>Astrophytum</tn:genusPart>
        <tn:infragenericEpithet>Stigmatodactylus</tn:infragenericEpithet>
        <tn:authorship>D.R.Hunt</tn:authorship>
		<tn:publishedIn>Cactaceae Syst. Init. 16: 4 (11 Oct. 2003).</tn:publishedIn>
		<tn:year>2003</tn:year>
        <tn:hasAnnotation>
            <tn:NomenclaturalNote>
                <tn:noteType rdf:resource="&tn;#basedOn"/>
                <tn:objectTaxon rdf:resource="urn:lsid:ipni.org:names:70028178-1"/>
            </tn:NomenclaturalNote>
        </tn:hasAnnotation> 
 </tn:TaxonName>
  
<!-- example species. Is a replacement name (nomen novum) -->
  <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:907328-1:1.1.4.2.2.1">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Gentlea costaricensis Lundell</dc:title>
		<dcterms:created>2003-07-02</dcterms:created>
		<dcterms:modified>2006-01-15</dcterms:modified>
		<tn:rankString>spec.</tn:rankString>
		<tn:nameComplete>Gentlea costaricensis</tn:nameComplete>
        <tn:genusPart>Gentlea</tn:genusPart>
        <tn:specificEpithet>costaricensis</tn:specificEpithet>
        <tn:authorship>Lundell</tn:authorship>
		<tn:publishedIn>Wrightia 6(5): 115 (1980), nom. nov.:.</tn:publishedIn>
		<tn:hasAnnotation>
			<tn:NomenclaturalNote>
				<tn:noteType rdf:resource="&tn;#replacementNameFor"/>
				<tn:objectTaxon rdf:resource="urn:lsid:ipni.org:names:587264-1"/>
			</tn:NomenclaturalNote>
		</tn:hasAnnotation>
</tn:TaxonName>
		
<!-- example species. Has type data -->
  <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:1002492-1:1.1.2.2">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Maxillaria machinazensis D.E.Benn. &amp; Christenson</dc:title>
		<dcterms:created>2003-07-02 00:00:00.0</dcterms:created>
		<dcterms:modified>2006-01-15 06:10:58.0</dcterms:modified>
		<tn:rankString>spec.</tn:rankString>
		<tn:nameComplete>Maxillaria machinazensis</tn:nameComplete>
        <tn:genusPart>Maxillaria</tn:genusPart>
        <tn:specificEpithet>machinazensis</tn:specificEpithet>
        <tn:authorship>D.E.Benn. &amp; Christenson</tn:authorship>
		<tn:publishedIn>in Lindleyana, 13(2): 71 (1998)???.</tn:publishedIn>
		<tn:year>1998</tn:year>
		<tn:typifiedBy>
            <tn:NomenclaturalType>
                <dc:title>M. Cavero B. et al. 1642, NY (holo)</dc:title>
                <tn:typeSpecimen>M. Cavero B. et al. 1642, NY</tn:typeSpecimen>
                <tn:typeOfType rdf:resource="&tn;#holo" />
            </tn:NomenclaturalType>
        </tn:typifiedBy>
        <tn:typifiedBy>
            <tn:NomenclaturalType>
                <dc:title>M. Cavero B. et al. 1642, USM (iso)</dc:title>
                <tn:typeSpecimen>M. Cavero B. et al. 1642, USM</tn:typeSpecimen>
                <tn:typeOfType rdf:resource="&tn;#iso" />
            </tn:NomenclaturalType>
        </tn:typifiedBy>
 </tn:TaxonName>
 
 <!-- example species. Has a Lectotypification -->
   <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:199571-2:1.2">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Piper wrightii C.DC.</dc:title>
		<dcterms:created>2004-01-20 00:00:00.0</dcterms:created>
		<dcterms:modified>2004-12-23 14:43:26.0</dcterms:modified>
		<tn:rankString>spec.</tn:rankString>
		<tn:nameComplete>Piper wrightii</tn:nameComplete>
        <tn:genusPart>Piper</tn:genusPart>
        <tn:specificEpithet>wrightii</tn:specificEpithet>
        <tn:authorship>C.DC.</tn:authorship>
		<tn:publishedIn>Symb. Antill. 3: 189. 1902</tn:publishedIn>
		<tn:year>1902</tn:year>
		<tn:typifiedBy>
			<tn:NomenclaturalType>
				<dc:title>Wright 1687, GOET (lecto)</dc:title>
				<tn:typeOfType rdf:resource="&tn;#lecto"/>
                <tn:typeSpecimen>Wright 1687, GOET</tn:typeSpecimen>
                <tn:lectotypePublication>Saralegui in Fl. Rep. Cuba, Ser. A. Pl. Vasc. 9(3): 80. 2004</tn:lectotypePublication>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
	</tn:TaxonName>

<!-- example species. Has a Lectotypification with multiple isolectotypes -->
   <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:265591-2:1.3.2.1">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Vincetoxicum gentlei Lundell &amp; Standl.</dc:title>
		<dcterms:created>2004-01-20 00:00:00.0</dcterms:created>
		<dcterms:modified>2006-01-18 13:49:55.0</dcterms:modified>
		<tn:rankString>spec.</tn:rankString>
		<tn:nameComplete>Vincetoxicum gentlei</tn:nameComplete>
        <tn:genusPart>Vincetoxicum</tn:genusPart>
        <tn:specificEpithet>gentlei</tn:specificEpithet>
        <tn:authorship>Lundell &amp; Standl.</tn:authorship>
		<tn:publishedIn>Field Mus. Nat. Hist., Bot. Ser. 17: 269. 1937</tn:publishedIn>
		<tn:year>1937</tn:year>
		<tn:typifiedBy>
			<tn:NomenclaturalType>
				<dc:title>P. Gentle 1779, MICH (lecto)</dc:title>
				<tn:typeOfType rdf:resource="&tn;#lecto"/>
                <tn:typeSpecimen>P. Gentle 1779, MICH</tn:typeSpecimen>
                <tn:lectotypePublication>W.D.Stevens in Novon 15(4): 612. 2005 [12 Dec 2005]</tn:lectotypePublication>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
		<tn:typifiedBy>
			<tn:NomenclaturalType>
				<dc:title>P. Gentle 1779, A (isolecto)</dc:title>
				<tn:typeOfType rdf:resource="&tn;#iso"/>
                <tn:typeSpecimen>P. Gentle 1779, A</tn:typeSpecimen>
                <tn:lectotypePublication>W.D.Stevens in Novon 15(4): 612. 2005 [12 Dec 2005]</tn:lectotypePublication>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
		<tn:typifiedBy>
			<tn:NomenclaturalType>
				<dc:title>P. Gentle 1779, F (isolecto)</dc:title>
				<tn:typeOfType rdf:resource="&tn;#iso"/>
                <tn:typeSpecimen>P. Gentle 1779, F</tn:typeSpecimen>
                <tn:lectotypePublication>W.D.Stevens in Novon 15(4): 612. 2005 [12 Dec 2005]</tn:lectotypePublication>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
		<tn:typifiedBy>
			<tn:NomenclaturalType>
				<dc:title>P. Gentle 1779, MO (isolecto)</dc:title>
				<tn:typeOfType rdf:resource="&tn;#iso"/>
                <tn:typeSpecimen>P. Gentle 1779, MO</tn:typeSpecimen>
                <tn:lectotypePublication>W.D.Stevens in Novon 15(4): 612. 2005 [12 Dec 2005]</tn:lectotypePublication>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
		<tn:typifiedBy>
			<tn:NomenclaturalType>
				<dc:title>P. Gentle 1779, P (isolecto)</dc:title>
				<tn:typeOfType rdf:resource="&tn;#iso"/>
                <tn:typeSpecimen>P. Gentle 1779, P</tn:typeSpecimen>
                <tn:lectotypePublication>W.D.Stevens in Novon 15(4): 612. 2005 [12 Dec 2005]</tn:lectotypePublication>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
		<tn:typifiedBy>
			<tn:NomenclaturalType>
				<dc:title>P. Gentle 1779, US (isolecto)</dc:title>
				<tn:typeOfType rdf:resource="&tn;#iso"/>
                <tn:typeSpecimen>P. Gentle 1779, US</tn:typeSpecimen>
                <tn:lectotypePublication>W.D.Stevens in Novon 15(4): 612. 2005 [12 Dec 2005]</tn:lectotypePublication>
			</tn:NomenclaturalType>
		</tn:typifiedBy>
	</tn:TaxonName>
	
 <!-- example infraspecific name. Has a basionym and is also a later homonym of something -->
    <tn:TaxonName rdf:about="urn:lsid:ipni.org:names:60433970-2:1.2">
		<tn:nomenclaturalCode rdf:resource="&tn;#botanical" />
		<dc:title>Malus orientalis var. montana (Uglitzk.) Ponomar.</dc:title>
		<dcterms:created>2004-07-01 04:44:21.0</dcterms:created>
		<dcterms:modified>2004-11-25 11:58:58.0</dcterms:modified>
		<tn:rankString>var.</tn:rankString>
		<tn:nameComplete>Malus orientalis var. montana</tn:nameComplete>
        <tn:genusPart>Malus</tn:genusPart>
        <tn:specificEpithet>orientalis</tn:specificEpithet>
        <tn:infraspecificEpithet>montana</tn:infraspecificEpithet>
        <tn:authorship>(Uglitzk.) Ponomar.</tn:authorship>
        <tn:basionymAuthorship>Uglitzk.</tn:basionymAuthorship>
        <tn:combinationAuthorship>Ponomar.</tn:combinationAuthorship>
 		<tn:publishedIn>Sborn. Nauchn. Trudov Prikl. Bot. Genet. Selekts. 146: 7. 1992</tn:publishedIn>
		<tn:year>1992</tn:year>
        <tn:hasBasionym rdf:resource="urn:lsid:ipni.org:Names:895825-1"/>
		<tn:hasAnnotation>
			<tn:NomenclaturalNote>
				<tn:noteType rdf:resource="&tn;#laterHomonymOf"/>
				<tn:objectTaxon rdf:resource="urn:lsid:ipni.org:names:985539-1"/>
			</tn:NomenclaturalNote>
		</tn:hasAnnotation>
		<tn:hasAnnotation>
			<tn:NomenclaturalNote>
				<tn:noteType rdf:resource="&tn;#publicationStatus"/>
				<tn:note>nom. illeg. later homonym</tn:note>
			</tn:NomenclaturalNote>
		</tn:hasAnnotation>
	</tn:TaxonName>
</rdf:RDF>

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