[dwc-mixs] [gensc-cig] Use of the MIxS-based DWC extension

[Chris Mungall]

Excellent!

What is the status of mapping the remaining fields here:

  <extension encoding="UTF-8" fieldsTerminatedBy="\t"
linesTerminatedBy="\n" fieldsEnclosedBy="" ignoreHeaderLines="1" rowType="
http://rs.gbif.org/terms/1.0/DNADerivedData">

    <files>

      <location>dnaderiveddata.txt</location>

    </files>

    <coreid index="0" />

    <field index="1" term="https://w3id.org/gensc/terms/MIXS:0000012"/>

    <field index="2" term="https://w3id.org/gensc/terms/MIXS:0000013"/>

    <field index="3" term="https://w3id.org/gensc/terms/MIXS:0000014"/>

    <field index="4" term="https://w3id.org/gensc/terms/MIXS:0000044"/>

    <field index="5" term="https://w3id.org/gensc/terms/MIXS:0000090"/>

    <field index="6" term="http://rs.gbif.org/terms/pcr_primer_forward"/>

    <field index="7" term="http://rs.gbif.org/terms/pcr_primer_reverse"/>

    <field index="8" term="http://rs.gbif.org/terms/pcr_primer_name_forward
"/>

    <field index="9" term="http://rs.gbif.org/terms/pcr_primer_name_reverse
"/>

    <field index="10" term="http://rs.gbif.org/terms/pcr_primer_reference"/>

    <field index="11" term="http://rs.gbif.org/terms/dna_sequence"/>

  </extension>

Some are in MIxS but not as 1:1; e.g. MIxS has a combined field for primers
whereas many databases separate these into two. Also it looks like the URIs
like http://rs.gbif.org/terms/pcr_primer_forward don't resolve?

On Wed, Sep 29, 2021 at 7:44 AM Chris H <only1chunts at gmail.com> wrote:

> Good news! Thank you Thomas for sharing.
>
> I am forwarding this onto the GSC-MIxS group as I’m sure they will be
> pleased to see real-world usage of the work we do.
>
>
>
> Thanks
>
> Chris
>
>
>
>
>
> *From: *Thomas Stjernegaard Jeppesen <tsjeppesen at gbif.org>
> *Sent: *29 September 2021 15:09
> *To: *dwc-mixs at lists.tdwg.org
> *Subject: *[dwc-mixs] Use of the MIxS-based DWC extension
>
>
>
> Hi All
>
> I just wanted to let you know that GBIF now starts to see incoming  data
> using the MIxS-based DNA derived data extension for DwC.
>
> A few examples:
>
>    1. https://www.gbif.org/dataset/e0b59ee7-19ae-4eb0-9217-33317fb50d47
>       1. Example occurrence record:
>       https://www.gbif.org/occurrence/3357191905 (scroll to the bottom to
>       see the MIxS / DNA data)
>    2. https://www.gbif.org/dataset/9e29a2fe-d780-48a8-a93f-9ce041f9202f
>
>
>    1. Example occurrence record:
>       https://www.gbif.org/occurrence/3356905303
>    1. https://www.gbif.org/dataset/040c5662-da76-4782-a48e-cdea1892d14c
>
>
>    1. Example occurrence: https://www.gbif.org/occurrence/2979635351
>
>
>
> Best wishes
>
>
>
> *Thomas Stjernegaard Jeppesen*
>
> Web developer
>
> orcid.org/0000-0003-1691-239X
>
>
>
> *Global Biodiversity Information Facility*
>
> Universitetsparken 15, 2100 København Ø
>
> www.gbif.org | www.catalogueoflife.org/
>
>
>
>
>
>
>
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