On Tue, Oct 19, 2010 at 5:00 AM,
<tdwg-phylo-request@lists.tdwg.org> wrote:
Send tdwg-phylo mailing list submissions to
tdwg-phylo@lists.tdwg.org
To subscribe or unsubscribe via the World Wide Web, visit
http://lists.tdwg.org/mailman/listinfo/tdwg-phylo
or, via email, send a message with subject or body 'help' to
tdwg-phylo-request@lists.tdwg.org
You can reach the person managing the list at
tdwg-phylo-owner@lists.tdwg.org
When replying, please edit your Subject line so it is more specific
than "Re: Contents of tdwg-phylo digest..."
Today's Topics:
1. publishing trees in CDAO as linked open data? (Arlin Stoltzfus)
----------------------------------------------------------------------
Message: 1
Date: Mon, 18 Oct 2010 12:32:39 -0400
From: Arlin Stoltzfus <arlin@umd.edu>
Subject: [Tdwg-phylo] publishing trees in CDAO as linked open data?
To: CDAO list <cdao-discuss@lists.sourceforge.net>, Phylogenetics
Standards Interest Group <tdwg-phylo@lists.tdwg.org>
Message-ID: <BAAFA68C-2622-409A-B530-1CABADC36016@umd.edu>
Content-Type: text/plain; charset="US-ASCII"; format=flowed; delsp=yes
Dear all--
At the Biodiversity Information Standards (TDWG) meeting last month, a
sub-group of the phylogenetic standards working group started a
project to assess "current best practices for publishing trees
electronically". At present, probably the best way to publish a tree
is to use the TreeBASE submission process, which makes it possible to
upload a NEXUS file and create associations of OTUs with taxon IDs,
and of data rows with accessions, and so on. But there are also some
other possibilities. The preliminary report is being assembled here:
http://wiki.tdwg.org/twiki/bin/view/Phylogenetics/LinkingTrees2010
Our plan is (over the next 6 weeks) to get feedback on this
preliminary report, then analyze the results and prepare a more
extensive report for publication.
One possibility that we haven't examined yet is to publish a tree
electronically by rendering it in RDF in the language of CDAO
(Comparative Data Analysis Ontology) and then contributing it to the
Linked-Open-Data cloud in some way.
Does anyone out there want to explore this idea and contribute the
results to the TDWG project? If so, please let me know.
Arlin
-------
Arlin Stoltzfus (arlin@umd.edu)
Fellow, IBBR; Adj. Assoc. Prof., UMCP; Research Biologist, NIST
IBBR, 9600 Gudelsky Drive, Rockville, MD
tel: 240 314 6208; web: www.molevol.org
------------------------------
_______________________________________________
tdwg-phylo mailing list
tdwg-phylo@lists.tdwg.org
http://lists.tdwg.org/mailman/listinfo/tdwg-phylo
End of tdwg-phylo Digest, Vol 2, Issue 3
****************************************