Humboldt Task Group Meeting Wed 19 April 2023, 08:00 EST/12:00 UTC
Hi all,
I am very sorry for the short notice. I will not be able to join our meeting. I had to travel to Argentina last minute to help my family. My mom had an emergency but now she is recovering very well so there is nothing to worry about.
I will kindly ask you to discuss and review the following documents so we can finally submit the extension.
* Implementation report (please review and add yourself as an author herehttps://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit#heading=h.8dmewb9wxxbk) * List of terms (please review all eco: terms herehttps://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit#gid=673949815, tab: complete_term_list_from_JW) * Additional document to better explain eco:isLeastSpecificTargetCategoryQuantityInclusive (please add content, examples, links to other terms, etc. to this https://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit document). * This will be added as an official document to the list of terms. The idea here, is that all the comments and relations of other terms will be better captured in a separate document instead of making a terribly long Comments section. * Humboldt Extension Documentation (please review herehttps://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit?usp=sharing) * This will not be an official document but will probably need to be linked in our presentation. Basically, I took our testing guide and removed all the parts related to the testing. We will need to update this document and polish it.
When to meet Wednesdays 8 am EST (see your time herehttps://www.timeanddate.com/worldclock/converter.html?iso=20230419T120000&p1=1440&p2=111&p3=37&p4=136&p5=51&p6=179&p7=64&p8=75&p9=224&p10=248&p11=152)
Where to meet Zoom link: https://yale.zoom.us/j/97318391101https://www.google.com/url?q=https://yale.zoom.us/j/97318391101&sa=D&source=calendar&usd=2&usg=AOvVaw131_ZV9o-84ivZDjGbSTBJ
Thank you and sorry for missing the meeting
All the best,
Yanina V. Sica, PhD Lead Data Team Map of Lifehttps://mol.org/ | Center for Biodiversity and Global Changehttps://bgc.yale.edu/ Yale University pronouns: she/her/hers If you are receiving this email outside of your working hours, I am not expecting you to read or respond.
Hi all,
I have a deadline today, so I can’t attend the meeting. However, I tried to put isLeastSpecificTargetCategoryQuantityInclusive into tables (Darwin Core) based on the examples in the comment, so here are my thoughts:
1. It looks much simpler without isLeastSpecificTargetCategoryQuantityInclusive (Darwin Core Archive, not the new Unified Model)
If isLeastSpecificTargetCategoryQuantityInclusive = true Use case without “isLeastSpecificTargetCategoryQuantityInclusive”
Occurrence
occurrenceID
eventID
taxonID
lifeStage
organismQuantity
organismQuantityType
occ_01
event_01
taxon_01
adult
1
individual
occ_02
event_01
taxon_01
juvenile
2
individual
occ_03
event_01
taxon_01
1
individual
eventID
Total individual of taxon_01
event_01
4 = 1 adult + 2 juvenile + 1 no lifestage
If isLeastSpecificTargetCategoryQuantityInclusive = false use case without “isLeastSpecificTargetCategoryQuantityInclusive”
Occurrence
occurrenceID
eventID
taxonID
lifeStage
organismQuantity
organismQuantityType
occ_01
event_01
taxon_01
adult
1
individual
occ_02
event_01
taxon_01
juvenile
2
individual
occ_03
event_01
taxon_01
4
individual
eventID
Total individual of taxon_01
event_01
7 = 1 adult + 2 juvenile + 4 no lifestage
2. Dummy Event needs to be created if isLeastSpecificTargetCategoryQuantityInclusive differs in each Taxon per sampling event (Darwin Core Archive, not the new Unified Model)
Multiple taxa per event with isLeastSpecificTargetCategoryQuantityInclusive
If this will lead to user creating dummy Event to use this term, I feel like people will not use it. I also think that then what is the point of using Event core this way?
Occurrence
occurrenceID
eventID
taxonID
lifeStage
organismQuantity
organismQuantityType
occ_01
event_01
taxon_01
adult
1
individual
occ_02
event_01
taxon_01
juvenile
2
individual
occ_03
event_01
taxon_01
4
individual
occ_04
event_02
taxon_02
4
individual
Humboldt
eventID
isLeastSpecificTargetCategoryQuantityInclusive
Total individual of taxon
event_01
true
taxon_01 = 1 adult + 2 juvenile + 1 no lifestage
event_02
false
taxon_02 = 4 no lifeStage
Multiple taxa per event without isLeastSpecificTargetCategoryQuantityInclusive
Occurrence
occurrenceID
eventID
taxonID
lifeStage
organismQuantity
organismQuantityType
occ_01
event_01
taxon_01
adult
1
individual
occ_02
event_01
taxon_01
juvenile
2
individual
occ_03
event_01
taxon_01
1
individual
occ_04
event_01
taxon_02
4
individual
eventID
Total individual of taxon
event_01
* taxon_01 = 1 adult + 2 juvenile + 1 no lifeStage
* taxon_02 = 4 no lifeStage
Maybe I missed something but I am not sure what is the merit of having isLeastSpecificTargetCategoryQuantityInclusive in Darwin Core (not the new unified model)? I also put all the examples above in the slides in Humboldt google drive: https://docs.google.com/presentation/d/1lsCqdh_OeAFPgJYT9nqP82wqZgVNaDQpWpq7...
Thanks a lot!!
Sincerely Ming
On 19 Apr 2023, at 04:01, ys628 yanina.sica@yale.edu wrote:
Hi all,
I am very sorry for the short notice. I will not be able to join our meeting. I had to travel to Argentina last minute to help my family. My mom had an emergency but now she is recovering very well so there is nothing to worry about.
I will kindly ask you to discuss and review the following documents so we can finally submit the extension.
* Implementation report (please review and add yourself as an author herehttps://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit#heading=h.8dmewb9wxxbk) * List of terms (please review all eco: terms herehttps://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit#gid=673949815, tab: complete_term_list_from_JW) * Additional document to better explain eco:isLeastSpecificTargetCategoryQuantityInclusive (please add content, examples, links to other terms, etc. to this https://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit document). * This will be added as an official document to the list of terms. The idea here, is that all the comments and relations of other terms will be better captured in a separate document instead of making a terribly long Comments section. * Humboldt Extension Documentation (please review herehttps://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit?usp=sharing) * This will not be an official document but will probably need to be linked in our presentation. Basically, I took our testing guide and removed all the parts related to the testing. We will need to update this document and polish it.
When to meet Wednesdays 8 am EST (see your time herehttps://www.timeanddate.com/worldclock/converter.html?iso=20230419T120000&p1=1440&p2=111&p3=37&p4=136&p5=51&p6=179&p7=64&p8=75&p9=224&p10=248&p11=152)
Where to meet Zoom link: https://yale.zoom.us/j/97318391101https://www.google.com/url?q=https://yale.zoom.us/j/97318391101&sa=D&source=calendar&usd=2&usg=AOvVaw131_ZV9o-84ivZDjGbSTBJ
Thank you and sorry for missing the meeting
All the best,
Yanina V. Sica, PhD Lead Data Team Map of Lifehttps://mol.org/ | Center for Biodiversity and Global Changehttps://bgc.yale.edu/ Yale University pronouns: she/her/hers If you are receiving this email outside of your working hours, I am not expecting you to read or respond. _______________________________________________ tdwg-humboldt mailing list tdwg-humboldt@lists.tdwg.orgmailto:tdwg-humboldt@lists.tdwg.org https://lists.tdwg.org/mailman/listinfo/tdwg-humboldt
Dear all,
I am at a conference, and unfortunately can't join the meeting this week. Hope to see you next week!
Ani
On 19/04/2023 04:01, ys628 wrote:
Hi all,
I am very sorry for the short notice. I will not be able to join our meeting. I had to travel to Argentina last minute to help my family. My mom had an emergency but now she is recovering very well so there is nothing to worry about.
I will kindly ask you to discuss and review the following documents so we can finally submit the extension.
Implementation report*(please review and add yourself as an author**here https://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit#heading=h.8dmewb9wxxbk**)*
List of terms (*please review all eco: terms **here https://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit#gid=673949815**,***tab:complete_term_list_from_JW)
Additional document to better explain eco:/isLeastSpecificTargetCategoryQuantityInclusive///(*please add content, examples, links to other terms, etc. to**thishttps://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit**document*).
o This will be added as an official document to the list of terms. The idea here, is that all the comments and relations of other terms will be better captured in a separate document instead of making a terribly long Comments section.
Humboldt Extension Documentation *(please review**here https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit?usp=sharing**)* o This will not be an official document but will probably need to be linked in our presentation. Basically, I took our testing guide and removed all the parts related to the testing. We will need to update this document and polish it.
*When to meet* Wednesdays 8 am EST (see your time here https://www.timeanddate.com/worldclock/converter.html?iso=20230419T120000&p1=1440&p2=111&p3=37&p4=136&p5=51&p6=179&p7=64&p8=75&p9=224&p10=248&p11=152)
*Where to meet* Zoom link: https://yale.zoom.us/j/97318391101 https://www.google.com/url?q=https://yale.zoom.us/j/97318391101&sa=D&source=calendar&usd=2&usg=AOvVaw131_ZV9o-84ivZDjGbSTBJ
Thank you and sorry for missing the meeting
All the best,
Yanina V. Sica, PhD Lead Data Team Map of Life https://mol.org/| Center for Biodiversity and Global Change https://bgc.yale.edu/ Yale University pronouns: she/her/hers /If you are receiving this email outside of your working hours, I am not expecting you to read or respond./
tdwg-humboldt mailing list tdwg-humboldt@lists.tdwg.org https://lists.tdwg.org/mailman/listinfo/tdwg-humboldt
------------------------------------------------------------------------
Dr Anahita JN Kazem
Data Steward & Biodiversity Informatics Scientist
Data & Code Unit (iBID / iBON) German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig |www.idiv.de
Department of Informatics Friedrich-Schiller-University Jena
anahita.kazem@idiv.de | Puschstraße 4 | D-04103 Leipzig | Germany
Hi Yani and all,
I said last week that I’d work on revising the H.E. documentation. However, I’m just not going to be able to get it done for this week’s meeting. I’ve way behind and I’ve got a bunch of stuff I need to get done by the end of the week. I won’t have a big enough block of time to devote to it until at least next week.
Sorry about that… Steve
-- Steven J. Baskauf, Ph.D. he/him/his Data Science and Data Curation Specialist / Librarian III Jean & Alexander Heard Libraries, Vanderbilt University Nashville, TN 37235, USA
Biodiversity Information Standards (TDWG) Executive Committee/Technical Architecture Group Chair https://baskauf.github.io/
From: tdwg-humboldt tdwg-humboldt-bounces@lists.tdwg.org on behalf of ys628 yanina.sica@yale.edu Date: Tuesday, April 18, 2023 at 9:01 PM To: Humboldt Core TG tdwg-humboldt@lists.tdwg.org, wmh6@cornell.edu wmh6@cornell.edu Subject: [tdwg-humboldt] Humboldt Task Group Meeting Wed 19 April 2023, 08:00 EST/12:00 UTC Hi all,
I am very sorry for the short notice. I will not be able to join our meeting. I had to travel to Argentina last minute to help my family. My mom had an emergency but now she is recovering very well so there is nothing to worry about.
I will kindly ask you to discuss and review the following documents so we can finally submit the extension.
* Implementation report (please review and add yourself as an author herehttps://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit#heading=h.8dmewb9wxxbk) * List of terms (please review all eco: terms herehttps://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit#gid=673949815, tab: complete_term_list_from_JW) * Additional document to better explain eco:isLeastSpecificTargetCategoryQuantityInclusive (please add content, examples, links to other terms, etc. to this https://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit document).
* This will be added as an official document to the list of terms. The idea here, is that all the comments and relations of other terms will be better captured in a separate document instead of making a terribly long Comments section.
* Humboldt Extension Documentation (please review herehttps://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit?usp=sharing)
* This will not be an official document but will probably need to be linked in our presentation. Basically, I took our testing guide and removed all the parts related to the testing. We will need to update this document and polish it. When to meet Wednesdays 8 am EST (see your time herehttps://www.timeanddate.com/worldclock/converter.html?iso=20230419T120000&p1=1440&p2=111&p3=37&p4=136&p5=51&p6=179&p7=64&p8=75&p9=224&p10=248&p11=152)
Where to meet Zoom link: https://yale.zoom.us/j/97318391101https://www.google.com/url?q=https://yale.zoom.us/j/97318391101&sa=D&source=calendar&usd=2&usg=AOvVaw131_ZV9o-84ivZDjGbSTBJ
Thank you and sorry for missing the meeting
All the best,
Yanina V. Sica, PhD Lead Data Team Map of Lifehttps://mol.org/ | Center for Biodiversity and Global Changehttps://bgc.yale.edu/ Yale University pronouns: she/her/hers If you are receiving this email outside of your working hours, I am not expecting you to read or respond.
Dear all,
I'm afraid I am in the same situation. Promised to comment on documentation by today, but am currently at a work retreat for several days and have not had time to finish. For the same reason, will also not be able to attend the meeting today.
Apologies for not contributing (so far)!
Best,
Ani
On 02/05/2023 04:51, Baskauf, Steven James wrote:
Hi Yani and all,
I said last week that I’d work on revising the H.E. documentation. However, I’m just not going to be able to get it done for this week’s meeting. I’ve way behind and I’ve got a bunch of stuff I need to get done by the end of the week. I won’t have a big enough block of time to devote to it until at least next week.
Sorry about that…
Steve
--
Steven J. Baskauf, Ph.D. he/him/his
Data Science and Data Curation Specialist / Librarian III
Jean & Alexander Heard Libraries, Vanderbilt University
Nashville, TN 37235, USA
Biodiversity Information Standards (TDWG) Executive Committee/Technical Architecture Group Chair
------------------------------------------------------------------------
Dr Anahita JN Kazem
Data Steward & Biodiversity Informatics Scientist
Data & Code Unit (iBID / iBON) German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig |www.idiv.de
Department of Informatics Friedrich-Schiller-University Jena
anahita.kazem@idiv.de | Puschstraße 4 | D-04103 Leipzig | Germany
participants (4)
-
Anahita Kazem
-
Baskauf, Steven James
-
Yi Ming Gan
-
ys628