Humboldt Task Group Meeting Wed 19 April 2023, 08:00 EST/12:00 UTC
Hi all, I am very sorry for the short notice. I will not be able to join our meeting. I had to travel to Argentina last minute to help my family. My mom had an emergency but now she is recovering very well so there is nothing to worry about. I will kindly ask you to discuss and review the following documents so we can finally submit the extension. * Implementation report (please review and add yourself as an author here<https://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit#heading=h.8dmewb9wxxbk>) * List of terms (please review all eco: terms here<https://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit#gid=673949815>, tab: complete_term_list_from_JW) * Additional document to better explain eco:isLeastSpecificTargetCategoryQuantityInclusive (please add content, examples, links to other terms, etc. to this <https://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit> document). * This will be added as an official document to the list of terms. The idea here, is that all the comments and relations of other terms will be better captured in a separate document instead of making a terribly long Comments section. * Humboldt Extension Documentation (please review here<https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit?usp=sharing>) * This will not be an official document but will probably need to be linked in our presentation. Basically, I took our testing guide and removed all the parts related to the testing. We will need to update this document and polish it. When to meet Wednesdays 8 am EST (see your time here<https://www.timeanddate.com/worldclock/converter.html?iso=20230419T120000&p1=1440&p2=111&p3=37&p4=136&p5=51&p6=179&p7=64&p8=75&p9=224&p10=248&p11=152>) Where to meet Zoom link: https://yale.zoom.us/j/97318391101<https://www.google.com/url?q=https://yale.zoom.us/j/97318391101&sa=D&source=calendar&usd=2&usg=AOvVaw131_ZV9o-84ivZDjGbSTBJ> Thank you and sorry for missing the meeting All the best, Yanina V. Sica, PhD Lead Data Team Map of Life<https://mol.org/> | Center for Biodiversity and Global Change<https://bgc.yale.edu/> Yale University pronouns: she/her/hers If you are receiving this email outside of your working hours, I am not expecting you to read or respond.
Hi all, I have a deadline today, so I can’t attend the meeting. However, I tried to put isLeastSpecificTargetCategoryQuantityInclusive into tables (Darwin Core) based on the examples in the comment, so here are my thoughts: 1. It looks much simpler without isLeastSpecificTargetCategoryQuantityInclusive (Darwin Core Archive, not the new Unified Model) If isLeastSpecificTargetCategoryQuantityInclusive = true Use case without “isLeastSpecificTargetCategoryQuantityInclusive” Occurrence occurrenceID eventID taxonID lifeStage organismQuantity organismQuantityType occ_01 event_01 taxon_01 adult 1 individual occ_02 event_01 taxon_01 juvenile 2 individual occ_03 event_01 taxon_01 1 individual eventID Total individual of taxon_01 event_01 4 = 1 adult + 2 juvenile + 1 no lifestage If isLeastSpecificTargetCategoryQuantityInclusive = false use case without “isLeastSpecificTargetCategoryQuantityInclusive” Occurrence occurrenceID eventID taxonID lifeStage organismQuantity organismQuantityType occ_01 event_01 taxon_01 adult 1 individual occ_02 event_01 taxon_01 juvenile 2 individual occ_03 event_01 taxon_01 4 individual eventID Total individual of taxon_01 event_01 7 = 1 adult + 2 juvenile + 4 no lifestage 2. Dummy Event needs to be created if isLeastSpecificTargetCategoryQuantityInclusive differs in each Taxon per sampling event (Darwin Core Archive, not the new Unified Model) Multiple taxa per event with isLeastSpecificTargetCategoryQuantityInclusive If this will lead to user creating dummy Event to use this term, I feel like people will not use it. I also think that then what is the point of using Event core this way? Occurrence occurrenceID eventID taxonID lifeStage organismQuantity organismQuantityType occ_01 event_01 taxon_01 adult 1 individual occ_02 event_01 taxon_01 juvenile 2 individual occ_03 event_01 taxon_01 4 individual occ_04 event_02 taxon_02 4 individual Humboldt eventID isLeastSpecificTargetCategoryQuantityInclusive Total individual of taxon event_01 true taxon_01 = 1 adult + 2 juvenile + 1 no lifestage event_02 false taxon_02 = 4 no lifeStage Multiple taxa per event without isLeastSpecificTargetCategoryQuantityInclusive Occurrence occurrenceID eventID taxonID lifeStage organismQuantity organismQuantityType occ_01 event_01 taxon_01 adult 1 individual occ_02 event_01 taxon_01 juvenile 2 individual occ_03 event_01 taxon_01 1 individual occ_04 event_01 taxon_02 4 individual eventID Total individual of taxon event_01 * taxon_01 = 1 adult + 2 juvenile + 1 no lifeStage * taxon_02 = 4 no lifeStage Maybe I missed something but I am not sure what is the merit of having isLeastSpecificTargetCategoryQuantityInclusive in Darwin Core (not the new unified model)? I also put all the examples above in the slides in Humboldt google drive: https://docs.google.com/presentation/d/1lsCqdh_OeAFPgJYT9nqP82wqZgVNaDQpWpq7... Thanks a lot!! Sincerely Ming On 19 Apr 2023, at 04:01, ys628 <yanina.sica@yale.edu> wrote: Hi all, I am very sorry for the short notice. I will not be able to join our meeting. I had to travel to Argentina last minute to help my family. My mom had an emergency but now she is recovering very well so there is nothing to worry about. I will kindly ask you to discuss and review the following documents so we can finally submit the extension. * Implementation report (please review and add yourself as an author here<https://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit#heading=h.8dmewb9wxxbk>) * List of terms (please review all eco: terms here<https://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit#gid=673949815>, tab: complete_term_list_from_JW) * Additional document to better explain eco:isLeastSpecificTargetCategoryQuantityInclusive (please add content, examples, links to other terms, etc. to this <https://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit> document). * This will be added as an official document to the list of terms. The idea here, is that all the comments and relations of other terms will be better captured in a separate document instead of making a terribly long Comments section. * Humboldt Extension Documentation (please review here<https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit?usp=sharing>) * This will not be an official document but will probably need to be linked in our presentation. Basically, I took our testing guide and removed all the parts related to the testing. We will need to update this document and polish it. When to meet Wednesdays 8 am EST (see your time here<https://www.timeanddate.com/worldclock/converter.html?iso=20230419T120000&p1=1440&p2=111&p3=37&p4=136&p5=51&p6=179&p7=64&p8=75&p9=224&p10=248&p11=152>) Where to meet Zoom link: https://yale.zoom.us/j/97318391101<https://www.google.com/url?q=https://yale.zoom.us/j/97318391101&sa=D&source=calendar&usd=2&usg=AOvVaw131_ZV9o-84ivZDjGbSTBJ> Thank you and sorry for missing the meeting All the best, Yanina V. Sica, PhD Lead Data Team Map of Life<https://mol.org/> | Center for Biodiversity and Global Change<https://bgc.yale.edu/> Yale University pronouns: she/her/hers If you are receiving this email outside of your working hours, I am not expecting you to read or respond. _______________________________________________ tdwg-humboldt mailing list tdwg-humboldt@lists.tdwg.org<mailto:tdwg-humboldt@lists.tdwg.org> https://lists.tdwg.org/mailman/listinfo/tdwg-humboldt
Dear all, I am at a conference, and unfortunately can't join the meeting this week. Hope to see you next week! Ani On 19/04/2023 04:01, ys628 wrote:
Hi all,
I am very sorry for the short notice. I will not be able to join our meeting. I had to travel to Argentina last minute to help my family. My mom had an emergency but now she is recovering very well so there is nothing to worry about.
I will kindly ask you to discuss and review the following documents so we can finally submit the extension.
* Implementation report*(please review and add yourself as an author**here <https://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit#heading=h.8dmewb9wxxbk>**)* * List of terms (*please review all eco: terms **here <https://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit#gid=673949815>**,***tab:complete_term_list_from_JW)
* Additional document to better explain eco:/isLeastSpecificTargetCategoryQuantityInclusive///(*please add content, examples, links to other terms, etc. to**this<https://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit>**document*).
o This will be added as an official document to the list of terms. The idea here, is that all the comments and relations of other terms will be better captured in a separate document instead of making a terribly long Comments section. * Humboldt Extension Documentation *(please review**here <https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit?usp=sharing>**)* o This will not be an official document but will probably need to be linked in our presentation. Basically, I took our testing guide and removed all the parts related to the testing. We will need to update this document and polish it.
*When to meet* Wednesdays 8 am EST (see your time here <https://www.timeanddate.com/worldclock/converter.html?iso=20230419T120000&p1=1440&p2=111&p3=37&p4=136&p5=51&p6=179&p7=64&p8=75&p9=224&p10=248&p11=152>)
*Where to meet* Zoom link: https://yale.zoom.us/j/97318391101 <https://www.google.com/url?q=https://yale.zoom.us/j/97318391101&sa=D&source=calendar&usd=2&usg=AOvVaw131_ZV9o-84ivZDjGbSTBJ>
Thank you and sorry for missing the meeting
All the best,
Yanina V. Sica, PhD Lead Data Team Map of Life <https://mol.org/>| Center for Biodiversity and Global Change <https://bgc.yale.edu/> Yale University pronouns: she/her/hers /If you are receiving this email outside of your working hours, I am not expecting you to read or respond./
_______________________________________________ tdwg-humboldt mailing list tdwg-humboldt@lists.tdwg.org https://lists.tdwg.org/mailman/listinfo/tdwg-humboldt
------------------------------------------------------------------------ Dr Anahita JN Kazem Data Steward & Biodiversity Informatics Scientist Data & Code Unit (iBID / iBON) German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig |www.idiv.de Department of Informatics Friedrich-Schiller-University Jena anahita.kazem@idiv.de | Puschstraße 4 | D-04103 Leipzig | Germany
Hi Yani and all, I said last week that I’d work on revising the H.E. documentation. However, I’m just not going to be able to get it done for this week’s meeting. I’ve way behind and I’ve got a bunch of stuff I need to get done by the end of the week. I won’t have a big enough block of time to devote to it until at least next week. Sorry about that… Steve -- Steven J. Baskauf, Ph.D. he/him/his Data Science and Data Curation Specialist / Librarian III Jean & Alexander Heard Libraries, Vanderbilt University Nashville, TN 37235, USA Biodiversity Information Standards (TDWG) Executive Committee/Technical Architecture Group Chair https://baskauf.github.io/ From: tdwg-humboldt <tdwg-humboldt-bounces@lists.tdwg.org> on behalf of ys628 <yanina.sica@yale.edu> Date: Tuesday, April 18, 2023 at 9:01 PM To: Humboldt Core TG <tdwg-humboldt@lists.tdwg.org>, wmh6@cornell.edu <wmh6@cornell.edu> Subject: [tdwg-humboldt] Humboldt Task Group Meeting Wed 19 April 2023, 08:00 EST/12:00 UTC Hi all, I am very sorry for the short notice. I will not be able to join our meeting. I had to travel to Argentina last minute to help my family. My mom had an emergency but now she is recovering very well so there is nothing to worry about. I will kindly ask you to discuss and review the following documents so we can finally submit the extension. * Implementation report (please review and add yourself as an author here<https://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit#heading=h.8dmewb9wxxbk>) * List of terms (please review all eco: terms here<https://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit#gid=673949815>, tab: complete_term_list_from_JW) * Additional document to better explain eco:isLeastSpecificTargetCategoryQuantityInclusive (please add content, examples, links to other terms, etc. to this <https://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit> document). * This will be added as an official document to the list of terms. The idea here, is that all the comments and relations of other terms will be better captured in a separate document instead of making a terribly long Comments section. * Humboldt Extension Documentation (please review here<https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit?usp=sharing>) * This will not be an official document but will probably need to be linked in our presentation. Basically, I took our testing guide and removed all the parts related to the testing. We will need to update this document and polish it. When to meet Wednesdays 8 am EST (see your time here<https://www.timeanddate.com/worldclock/converter.html?iso=20230419T120000&p1=1440&p2=111&p3=37&p4=136&p5=51&p6=179&p7=64&p8=75&p9=224&p10=248&p11=152>) Where to meet Zoom link: https://yale.zoom.us/j/97318391101<https://www.google.com/url?q=https://yale.zoom.us/j/97318391101&sa=D&source=calendar&usd=2&usg=AOvVaw131_ZV9o-84ivZDjGbSTBJ> Thank you and sorry for missing the meeting All the best, Yanina V. Sica, PhD Lead Data Team Map of Life<https://mol.org/> | Center for Biodiversity and Global Change<https://bgc.yale.edu/> Yale University pronouns: she/her/hers If you are receiving this email outside of your working hours, I am not expecting you to read or respond.
Dear all, I'm afraid I am in the same situation. Promised to comment on documentation by today, but am currently at a work retreat for several days and have not had time to finish. For the same reason, will also not be able to attend the meeting today. Apologies for not contributing (so far)! Best, Ani On 02/05/2023 04:51, Baskauf, Steven James wrote:
Hi Yani and all,
I said last week that I’d work on revising the H.E. documentation. However, I’m just not going to be able to get it done for this week’s meeting. I’ve way behind and I’ve got a bunch of stuff I need to get done by the end of the week. I won’t have a big enough block of time to devote to it until at least next week.
Sorry about that…
Steve
--
Steven J. Baskauf, Ph.D. he/him/his
Data Science and Data Curation Specialist / Librarian III
Jean & Alexander Heard Libraries, Vanderbilt University
Nashville, TN 37235, USA
Biodiversity Information Standards (TDWG) Executive Committee/Technical Architecture Group Chair
------------------------------------------------------------------------ Dr Anahita JN Kazem Data Steward & Biodiversity Informatics Scientist Data & Code Unit (iBID / iBON) German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig |www.idiv.de Department of Informatics Friedrich-Schiller-University Jena anahita.kazem@idiv.de | Puschstraße 4 | D-04103 Leipzig | Germany
participants (4)
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Anahita Kazem
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Baskauf, Steven James
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Yi Ming Gan
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ys628