Hi Yani,
Since North America has switched to Daylight Savings Time, but Europe hasn’t and I’m not sure about the southern hemisphere changeover, can you confirm the meeting time? My calendar is showing the same time as always for me (7 AM Central U.S. Time). But since the time has only changed for us, I’m unclear about what will show up on other calendars. I believe that the time on the calendar invitation corresponds to 12:00 UTC.
Steve
-- Steven J. Baskauf, Ph.D. he/him/his Data Science and Data Curation Specialist / Librarian III Jean & Alexander Heard Libraries, Vanderbilt University Nashville, TN 37235, USA
Biodiversity Information Standards (TDWG) Executive Committee/Technical Architecture Group Chair https://baskauf.github.io/
From: tdwg-humboldt tdwg-humboldt-bounces@lists.tdwg.org on behalf of ys628 yanina.sica@yale.edu Reply-To: Humboldt Core TG tdwg-humboldt@lists.tdwg.org Date: Monday, March 13, 2023 at 9:52 AM To: Humboldt Core TG tdwg-humboldt@lists.tdwg.org Subject: [tdwg-humboldt] Humboldt Task Group Meeting Wed 15 March 2023, 08:00 EST/13:00 UTC
Hi all,
In preparation for our meeting this week. I will kindly ask you to review the definition of the new term sumQuantities which allows the users to undertand if the dwc:organismQuantity should be summed or not to get final species counts (see below).
Also, we started the Implementation Experience Reporthttps://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.google.com%2Fdocument%2Fd%2F1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk%2Fedit%23&data=05%7C01%7Csteve.baskauf%40vanderbilt.edu%7Cec097113fba2431c9f9608db23d29106%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C638143159519832293%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=gVuIKY1sA7tDhIkY5NfyzOcIA9rW0BBSUGP2dhXIUno%3D&reserved=0, based on the Audubon example shared by Steve. Please start completing the sections with your experience or thoughts.
Thank you and see you on Wednesday!
Zoom link: https://yale.zoom.us/j/97318391101https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.google.com%2Furl%3Fq%3Dhttps%3A%2F%2Fyale.zoom.us%2Fj%2F97318391101%26sa%3DD%26source%3Dcalendar%26usd%3D2%26usg%3DAOvVaw131_ZV9o-84ivZDjGbSTBJ&data=05%7C01%7Csteve.baskauf%40vanderbilt.edu%7Cec097113fba2431c9f9608db23d29106%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C638143159519832293%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=pf8Y2ndH6kTjysU%2BgXwSye2G8RF1fk%2FYdODz%2BClYNiM%3D&reserved=0
sumQuantities Please suggest changes for current definition/comments below! 1. Definition: The total detected quantity for a Taxon in an Event is the sum of all dwc:organismQuantity for the Taxon in the Event.
2. Comments: Recommended values are True and False. If True, the total detected quantity of organisms for a Taxon in an Event is the sum of all dwc:organismQuantity for the Taxon in the Event and dwc:organismQuantity can be added to get the total detected quantity of organisms in an Event. If false, the total detected quantity of organisms for a Taxon in an Event is the dwc:organismQuantity of the least specific category listed for the Taxon in the Event and dwc:organismQuantity can not be added to get the total detected quantity of organisms in an Event. 3. Examples: "`true`, `false`" For more context, see Humbold case studyhttps://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.google.com%2Fdocument%2Fd%2F1eGD69E-KzqdOcjh637iPrp1gv_J55CM2VPAjD1PSu_w%2Fedit%23&data=05%7C01%7Csteve.baskauf%40vanderbilt.edu%7Cec097113fba2431c9f9608db23d29106%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C638143159519832293%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=orA%2B%2BOW76rt%2BjEJv14LtpLLWACQJxDD0twdLq0e0fFY%3D&reserved=0. Based on the example tables that John created I simplified below for easy interpretation of this term (PLEASE JOHN CORRECT IF ANYTHING IS WRONG):
* ebird case where organismQuantity (for ebird_target_1 = species level) is the sum of organismQuantity for that specific taxonomic level (only 2 organisms at the species level were detected not including the subspecies). Then, sumQuantities =TRUE because to get the total number of organisms detected in the Event without a taxon level distinction (15), the organismQuantity CAN be added (2+13=15). IF there had been a target "Aves" with count 15 (ebird_target_0), the total number of organisms detected would have been 30 (15 Aves unidentified to species and 2+13 Aves identified to species.
* obis case where organismQuantity (for bw_target_3 = Electrona antarctica without lifestage distinction) is already the sum of organismQuantity for the more specific targets (lava and postmeta, 15=13 +2). Then, sumQuantities = FALSE because to get the total number of organisms detected in the Event without a lifestage distinction (15), the organismQuantity CANNOT be added (15+2+13=30). IF the Electrona antarctica count without any lifeStage distinction (bw_target_3) had been 17, that means that there were 17 total E. antarctica and 2 of them were not larvae or postmetas.
eventID
targetID
sumQuantities
include
Or
Exclude
targetTraitType
targetTraitValue
targetTraitUnit
isReportingComplete
ebird_event_1
ebird_target_1
TRUE
include
taxon
Aves
TRUE
ebird_event_1
ebird_target_1
TRUE
include
taxonRank
species
TRUE
bw_event_3
bw_target_3
FALSE
include
taxon
Electrona antarctica
TRUE
bw_event_3
bw_target_4
FALSE
include
taxon
Electrona antarctica
TRUE
bw_event_3
bw_target_4
FALSE
include
lifeStage
larva
TRUE
bw_event_3
bw_target_5
FALSE
include
taxon
Electrona antarctica
TRUE
bw_event_3
bw_target_5
FALSE
include
lifeStage
postmeta
TRUE
targetID
observedTaxon
organismQuantity
organismQuantityType
ebird_target_1
Hirundo rustica
2
individuals
ebird_target_1
Hirundo rustica rustica
13
individuals
bw_target_3
Electrona antarctica
15
individuals
bw_target_4
Electrona antarctica
13
individuals
bw_target_5
Electrona antarctica
2
individuals
Yanina V. Sica, PhD Lead Data Team Map of Lifehttps://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmol.org%2F&data=05%7C01%7Csteve.baskauf%40vanderbilt.edu%7Cec097113fba2431c9f9608db23d29106%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C638143159519832293%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=G9PPyPT3zC%2BieZAF4OgN%2BRWQxhc8Oer2Ns099nfqVJg%3D&reserved=0 | Center for Biodiversity and Global Changehttps://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbgc.yale.edu%2F&data=05%7C01%7Csteve.baskauf%40vanderbilt.edu%7Cec097113fba2431c9f9608db23d29106%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C638143159519832293%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=rgNiUINSM96PwbDXGkIx1Hp72n4zZzUGYRjOvemHNEA%3D&reserved=0 Yale University pronouns: she/her/hers If you are receiving this email outside of your working hours, I am not expecting you to read or respond.