Greetings John, et al.
Stepping in gently here (having not been at all these conversations). So please feel free to ignore this if just too off-basae.
I'm wondering why not add
Identification,identifiedByID? to
Identification,identifiedBy Identification,identificationReferences
And coherently then,
Sampling Effort,samplingPerformedByID to go with Sampling Effort,samplingPerformedBy
Same for Sampling and Vouchers?
Material Collected,hasVouchers Material Collected,voucherInstitutions
Who vouchered? (recordedBy, recordedByID?)
And, for all of the above information outlined in the XML list of groups and related terms, where does the information go about who did this sampling, as part of what project? grant numbers? etc. The EML file? (Where's the metadata?). Thanks for clueing me in.
Exciting to see the work getting to the place where it can be implemented 🙂
Debbie ________________________________ From: tdwg-humboldt tdwg-humboldt-bounces@lists.tdwg.org on behalf of John Wieczorek tuco@berkeley.edu Sent: Monday, July 31, 2023 9:18 AM To: Humboldt Core TG tdwg-humboldt@lists.tdwg.org Cc: Wesley M. Hochachka wmh6@cornell.edu; tdwg-humboldt tdwg-humboldt-bounces@lists.tdwg.org Subject: Re: [tdwg-humboldt] Humboldt next steps!
Hi folks,
I hope the listserv is working.
I have made the necessary edits to the eco: terms in preparation for a new extension XML file. I set up the script so that the extension XML can be generated from the term_versions.csv file (the canonical management file where the term versions are archived). The script allows the XML file to contain sections in which to group terms so that they can be seen and mapped together in the IPT. I have proposed some new group names and rearranged the terms in them in the hope that it might make the mapping process flow better in the IPT. The names of the group, the order of groups and the order of terms within the groups can all be set easily in a configuration file separate from the term_versions.csv file. It would be nice if we could decide as a Task Group on these groupings and orders before making a release. It will help people assess the proposal too, I believe. The groupings and term order I propose follow:
group,term Site,siteCount Site,siteNestingDescription Site,verbatimSiteDescriptions Site,verbatimSiteNames Site,geospatialScopeAreaInSquareKilometers Site,totalAreaSampledInSquareKilometers Site,reportedWeather Site,reportedExtremeConditions
Habitat Scope,targetHabitatScope Habitat Scope,excludedHabitatScope
Temporal Scope,eventDuration Temporal Scope,eventDurationUnit
Taxonomic Scope,targetTaxonomicScope Taxonomic Scope,excludedTaxonomicScope Taxonomic Scope,taxonCompletenessReported Taxonomic Scope,taxonCompletenessProtocols Taxonomic Scope,isTaxonomicScopeComplete Taxonomic Scope,isAbsenceReported Taxonomic Scope,absentTaxa
Organismal Scope,targetLifeStageScope Organismal Scope,excludedLifeStageScope Organismal Scope,isLifeStageScopeComplete Organismal Scope,targetDegreeOfEstablishmentScope Organismal Scope,excludedDegreeOfEstablishmentScope Organismal Scope,isDegreeOfEstablishmentScopeComplete Organismal Scope,targetGrowthFormScope Organismal Scope,excludedGrowthFormScope Organismal Scope,isGrowthFormScopeComplete
Identification,identifiedBy Identification,identificationReferences
Methodology Description,compilationType Methodology Description,compilationSourceTypes Methodology Description,inventoryTypes Methodology Description,protocolNames Methodology Description,protocolDescription Methodology Description,protocolReferences Methodology Description,isAbundanceReported Methodology Description,isAbundanceCapReported Methodology Description,abundanceCap Methodology Description,isVegetationCoverReported Methodology Description,isLeastSpecificTargetCategoryQuantityInclusive
Material Collected,hasVouchers Material Collected,voucherInstitutions Material Collected,hasMaterialSamples Material Collected,materialSampleTypes
Sampling Effort,samplingPerformedBy Sampling Effort,isSamplingEffortReported Sampling Effort,samplingEffortProtocol Sampling Effort,samplingEffortValue Sampling Effort,samplingEffortUnit
The original groups and term order were:
General Dataset & Identification,samplingPerformedBy General Dataset & Identification,identificationReferences General Dataset & Identification,identifiedBy
Geospatial Scope & Habitat,geospatialScopeAreaInSquareKilometers Geospatial Scope & Habitat,totalAreaSampledInSquareKilometers Geospatial Scope & Habitat,siteNestingDescription Geospatial Scope & Habitat,siteCount Geospatial Scope & Habitat,verbatimSiteDescriptions Geospatial Scope & Habitat,verbatimSiteNames Geospatial Scope & Habitat,targetHabitatScope Geospatial Scope & Habitat,excludedHabitatScope Geospatial Scope & Habitat,reportedWeather Geospatial Scope & Habitat,reportedExtremeConditions
Temporal Scope,eventDuration Temporal Scope,eventDurationUnit
Taxonomic & organismal Scope,targetTaxonomicScope Taxonomic & organismal Scope,targetDegreeOfEstablishmentScope Taxonomic & organismal Scope,targetGrowthFormScope Taxonomic & organismal Scope,targetLifeStageScope Taxonomic & organismal Scope,excludedTaxonomicScope Taxonomic & organismal Scope,excludedDegreeOfEstablishmentScope Taxonomic & organismal Scope,excludedGrowthFormScope Taxonomic & organismal Scope,excludedLifeStageScope
Methodology Description,compilationType Methodology Description,compilationSourceTypes Methodology Description,inventoryTypes Methodology Description,protocolNames Methodology Description,protocolDescription Methodology Description,protocolReferences Methodology Description,isAbundanceReported Methodology Description,isAbundanceCapReported Methodology Description,abundanceCap Methodology Description,isVegetationCoverReported Methodology Description,hasVouchers Methodology Description,voucherInstitutions Methodology Description,hasMaterialSamples Methodology Description,materialSampleTypes Methodology Description,isLeastSpecificTargetCategoryQuantityInclusive
Completeness & Effort,isSamplingEffortReported Completeness & Effort,samplingEffortProtocol Completeness & Effort,samplingEffortValue Completeness & Effort,samplingEffortUnit Completeness & Effort,taxonCompletenessReported Completeness & Effort,taxonCompletenessProtocols Completeness & Effort,isTaxonomicScopeComplete Completeness & Effort,isDegreeOfEstablishmentScopeComplete Completeness & Effort,isGrowthFormScopeComplete Completeness & Effort,isLifeStageScopeComplete Completeness & Effort,isAbsenceReported Completeness & Effort,absentTaxa
On Wed, Jul 26, 2023 at 12:14 PM Yanina Sica <yanina.sica@gmail.commailto:yanina.sica@gmail.com> wrote: Hi all,
Sorry about the listserve errors, duplicate emails, and event cancellations..the universe conspired against us today. Despite this, we managed to meet today and had a very good and productive meeting.
We have resolved our latest doubts regarding the principles in the hierarchical doc and summarized our next steps: - John will finish some small edits to the list of terms and update the IPT - Ming will map again the BROKE-West campaign with the latest eco: terms and guiding principles - John and Ming will populate some good examples in the hierarchical document - Dmitry will try to track GBIF's attention (and funding?) to push the Humboldt User Guide to the next level and transform it into a nice format that allows easy updates.
I cleaned and edited some of the previous documents and organized the Drive.
* Ratification-related documents are in this folderhttps://urldefense.com/v3/__https://drive.google.com/drive/u/0/folders/1XI1P07lgGRpVyTWiCiA7yJcs9tD_L0ma__;!!DZ3fjg!9NlelMrKXtJt5BQ5SUCGHKWBiJ0Ff1TaFNIAFrFx8Bxrtxv4FRdB1uV_3UbQ2bZpEyN83WO29Njc17xi3A$: * Implementation Experience Report for Humboldt extension for ecological inventorieshttps://urldefense.com/v3/__https://docs.google.com/document/d/1RFdSHoyzWCQk9qO6uup4xQjWOMzPyBb-A0mcjj98hbk/edit__;!!DZ3fjg!9NlelMrKXtJt5BQ5SUCGHKWBiJ0Ff1TaFNIAFrFx8Bxrtxv4FRdB1uV_3UbQ2bZpEyN83WO29NjmRefcVQ$ * Hierarchical Events in Humboldt Extension for ecological inventorieshttps://urldefense.com/v3/__https://docs.google.com/document/d/1r_XMEgB7p7OI7a5Ouq6G9oa7LmQFPcFhZZCLD9gWOIE/edit__;!!DZ3fjg!9NlelMrKXtJt5BQ5SUCGHKWBiJ0Ff1TaFNIAFrFx8Bxrtxv4FRdB1uV_3UbQ2bZpEyN83WO29NjXWXu-hg$ * isLeastSpecificTargetCategoryQuantityInclusivehttps://urldefense.com/v3/__https://docs.google.com/document/d/11fPW4JibRWUnrtTOZwDkAcxo5d-lwnATXyh3xmO65rs/edit*heading=h.yntaurhtrzrq__;Iw!!DZ3fjg!9NlelMrKXtJt5BQ5SUCGHKWBiJ0Ff1TaFNIAFrFx8Bxrtxv4FRdB1uV_3UbQ2bZpEyN83WO29NjOqe_TuQ$ * List of https://urldefense.com/v3/__https://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit*gid=673949815__;Iw!!DZ3fjg!9NlelMrKXtJt5BQ5SUCGHKWBiJ0Ff1TaFNIAFrFx8Bxrtxv4FRdB1uV_3UbQ2bZpEyN83WO29NiNRIOAnA$ termshttps://urldefense.com/v3/__https://docs.google.com/spreadsheets/d/1AbUUKDkgilbtHu9Dh_5V2dnOeQNbKBcRo4d7VEDyqOg/edit*gid=673949815__;Iw!!DZ3fjg!9NlelMrKXtJt5BQ5SUCGHKWBiJ0Ff1TaFNIAFrFx8Bxrtxv4FRdB1uV_3UbQ2bZpEyN83WO29NiNRIOAnA$ in Humboldt Extension for ecological inventories * Humboldt Extension for ecological inventories User Guidehttps://urldefense.com/v3/__https://docs.google.com/document/d/1rX4m94rtZDR_8iIe3RvRnNYKDJcmSX3ii4S5hCznEA0/edit*heading=h.saw9z0q9awkb__;Iw!!DZ3fjg!9NlelMrKXtJt5BQ5SUCGHKWBiJ0Ff1TaFNIAFrFx8Bxrtxv4FRdB1uV_3UbQ2bZpEyN83WO29Njun44waQ$
Next week, we will take a look at the examples from Ming and John and, if we all agree, we could formally submit the extension! We are getting there!
Thank you all for your last efforts!
All the best!
PS: You should have received a calendar invite for next week. In case you did not, please let me know. You can also find the info below:
Where to meet Zoom link: https://yale.zoom.us/j/97318391101https://urldefense.com/v3/__https://nam12.safelinks.protection.outlook.com/?url=https*3A*2F*2Fwww.google.com*2Furl*3Fq*3Dhttps*3A*2F*2Fyale.zoom.us*2Fj*2F97318391101*26sa*3DD*26source*3Dcalendar*26usd*3D2*26usg*3DAOvVaw131_ZV9o-84ivZDjGbSTBJ&data=05*7C01*7Cyanina.sica*40yale.edu*7Ce0fad83cfdf844fe35b308db8de9d6ef*7Cdd8cbebb21394df8b4114e3e87abeb5c*7C0*7C0*7C638259807737182622*7CUnknown*7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0*3D*7C3000*7C*7C*7C&sdata=NMXtT5JqDpdqUWJbqlP7685a*2Fcai1IIIqyIQTyfgyOw*3D&reserved=0__;JSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUl!!DZ3fjg!9NlelMrKXtJt5BQ5SUCGHKWBiJ0Ff1TaFNIAFrFx8Bxrtxv4FRdB1uV_3UbQ2bZpEyN83WO29NjlodfK6g$
Yani
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