sample Darwin Core Archives of various flavors
I have been playing around with turning Darwin Core Archives into RDF [1] and would like to extend my experiments to attempting to integrate data from archives that have very different core files. I have played with the dwcaMolluscsAndorra.zip Occurrence archive mentioned in Annex 3 of the DwC-A How-To Guide [2], but the Whales-DWC-A.zip file isn't available any more (I guess because of the demise of Google Code). A little bit of Google searching failed to turn up additional obvious example files. If anyone would be interested in making DwC-A archives available to me, I'd appreciate it. I'm particularly interested in archives that have cores other than Occurrence (although an Occurrence archive that has more complex data, including extensions, than the mollusc example would be welcome). If there are any MaterialSample or Event core arcives, that would be particularly interesting. Preferably, I'd like to have access to archives that contain publicly available data, since I'm likely to blog about the outcome and potentially use the data in examples. If there are publicly available archives downloadable via a URL, you can reply to the list - otherwise let me know how I could access your example. Thanks in advance for your help! Steve Baskauf [1] http://baskauf.blogspot.com/2016/10/guid-o-matic-meets-darwin-core-archives.... [2] http://www.gbif.org/resource/80636 -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees
Hi Steve, I have a sampling event dataset on GBIF, which is quite richly populated. http://www.gbif.org/dataset/5d784d06-fa1d-4f00-8cdc-663d04d26061 Regards Quentin Dr. Quentin Groom (Botany and Information Technology) Botanic Garden Meise Domein van Bouchout B-1860 Meise Belgium ORCID: 0000-0002-0596-5376 <http://orcid.org/0000-0002-0596-5376> Landline; +32 (0) 226 009 20 ext. 364 FAX: +32 (0) 226 009 45 E-mail: quentin.groom@plantentuinmeise.be Skype name: qgroom Website: www.botanicgarden.be On 25 October 2016 at 02:06, Steve Baskauf <steve.baskauf@vanderbilt.edu> wrote:
I have been playing around with turning Darwin Core Archives into RDF [1] and would like to extend my experiments to attempting to integrate data from archives that have very different core files. I have played with the dwcaMolluscsAndorra.zip Occurrence archive mentioned in Annex 3 of the DwC-A How-To Guide [2], but the Whales-DWC-A.zip file isn't available any more (I guess because of the demise of Google Code). A little bit of Google searching failed to turn up additional obvious example files.
If anyone would be interested in making DwC-A archives available to me, I'd appreciate it. I'm particularly interested in archives that have cores other than Occurrence (although an Occurrence archive that has more complex data, including extensions, than the mollusc example would be welcome). If there are any MaterialSample or Event core arcives, that would be particularly interesting. Preferably, I'd like to have access to archives that contain publicly available data, since I'm likely to blog about the outcome and potentially use the data in examples. If there are publicly available archives downloadable via a URL, you can reply to the list - otherwise let me know how I could access your example.
Thanks in advance for your help! Steve Baskauf
[1] http://baskauf.blogspot.com/2016/10/guid-o-matic-meets-darwi n-core-archives.html [2] http://www.gbif.org/resource/80636
-- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences
postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A.
delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235
office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees
_______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/tdwg-content
Hi Steve, you can find thousands of openly published dwc archives at the GBIF registry: http://www.gbif.org/dataset unless it is a biocase or digir resource each details page contains the link to the dwca on the right side. Taxon and Event core datasets are always dwc-as best, markus Von meinem iPhone gesendet
Am 25.10.2016 um 06:35 schrieb Quentin Groom <quentin.groom@plantentuinmeise.be>:
Hi Steve, I have a sampling event dataset on GBIF, which is quite richly populated. http://www.gbif.org/dataset/5d784d06-fa1d-4f00-8cdc-663d04d26061 Regards Quentin
Dr. Quentin Groom (Botany and Information Technology)
Botanic Garden Meise Domein van Bouchout B-1860 Meise Belgium
ORCID: 0000-0002-0596-5376
Landline; +32 (0) 226 009 20 ext. 364 FAX: +32 (0) 226 009 45
E-mail: quentin.groom@plantentuinmeise.be Skype name: qgroom Website: www.botanicgarden.be
On 25 October 2016 at 02:06, Steve Baskauf <steve.baskauf@vanderbilt.edu> wrote: I have been playing around with turning Darwin Core Archives into RDF [1] and would like to extend my experiments to attempting to integrate data from archives that have very different core files. I have played with the dwcaMolluscsAndorra.zip Occurrence archive mentioned in Annex 3 of the DwC-A How-To Guide [2], but the Whales-DWC-A.zip file isn't available any more (I guess because of the demise of Google Code). A little bit of Google searching failed to turn up additional obvious example files.
If anyone would be interested in making DwC-A archives available to me, I'd appreciate it. I'm particularly interested in archives that have cores other than Occurrence (although an Occurrence archive that has more complex data, including extensions, than the mollusc example would be welcome). If there are any MaterialSample or Event core arcives, that would be particularly interesting. Preferably, I'd like to have access to archives that contain publicly available data, since I'm likely to blog about the outcome and potentially use the data in examples. If there are publicly available archives downloadable via a URL, you can reply to the list - otherwise let me know how I could access your example.
Thanks in advance for your help! Steve Baskauf
[1] http://baskauf.blogspot.com/2016/10/guid-o-matic-meets-darwin-core-archives.... [2] http://www.gbif.org/resource/80636
-- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences
postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A.
delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235
office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees
_______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/tdwg-content
_______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/tdwg-content
Hi Steve, I’m not aware of any, although I think Gabi (CC’ed) might be the best to advise there. Gabi: Do you know of any DwC-A with a dwc:MaterialSample core? It’s not something the GBIF.org systems support, but I have a hunch you might have an example. Thanks, Tim From: tdwg-content <tdwg-content-bounces@lists.tdwg.org<mailto:tdwg-content-bounces@lists.tdwg.org>> on behalf of Steve Baskauf <steve.baskauf@vanderbilt.edu<mailto:steve.baskauf@vanderbilt.edu>> Organization: Vanderbilt University Dept. of Biological Sciences Date: Tuesday 25 October 2016 at 15:34 To: Markus Döring <m.doering@mac.com<mailto:m.doering@mac.com>>, "tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org>" <tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org>> Subject: Re: [tdwg-content] sample Darwin Core Archives of various flavors Markus and all, Thanks for the responses. I have several great datasets that I've downloaded from datasets at GBIF, so I have a lot to play with. I've got occurrence, taxon, and event core archives, which is great. I'd still be interested in an example of a material sample core archive if anyone has a good example, particularly if it had rich extension files linked to it. I'll probably report on my experimentation in a future blog post. Steve Markus Döring wrote: Hi Steve, you can find thousands of openly published dwc archives at the GBIF registry: http://www.gbif.org/dataset unless it is a biocase or digir resource each details page contains the link to the dwca on the right side. Taxon and Event core datasets are always dwc-as best, markus Von meinem iPhone gesendet Am 25.10.2016 um 06:35 schrieb Quentin Groom <quentin.groom@plantentuinmeise.be<mailto:quentin.groom@plantentuinmeise.be>>: Hi Steve, I have a sampling event dataset on GBIF, which is quite richly populated. http://www.gbif.org/dataset/5d784d06-fa1d-4f00-8cdc-663d04d26061 Regards Quentin Dr. Quentin Groom (Botany and Information Technology) Botanic Garden Meise Domein van Bouchout B-1860 Meise Belgium ORCID: 0000-0002-0596-5376<http://orcid.org/0000-0002-0596-5376> Landline; +32 (0) 226 009 20 ext. 364 FAX: +32 (0) 226 009 45 E-mail: quentin.groom@plantentuinmeise.be<mailto:quentin.groom@plantentuinmeise.be> Skype name: qgroom Website: www.botanicgarden.be<http://www.botanicgarden.be> On 25 October 2016 at 02:06, Steve Baskauf <steve.baskauf@vanderbilt.edu<mailto:steve.baskauf@vanderbilt.edu>> wrote: I have been playing around with turning Darwin Core Archives into RDF [1] and would like to extend my experiments to attempting to integrate data from archives that have very different core files. I have played with the dwcaMolluscsAndorra.zip Occurrence archive mentioned in Annex 3 of the DwC-A How-To Guide [2], but the Whales-DWC-A.zip file isn't available any more (I guess because of the demise of Google Code). A little bit of Google searching failed to turn up additional obvious example files. If anyone would be interested in making DwC-A archives available to me, I'd appreciate it. I'm particularly interested in archives that have cores other than Occurrence (although an Occurrence archive that has more complex data, including extensions, than the mollusc example would be welcome). If there are any MaterialSample or Event core arcives, that would be particularly interesting. Preferably, I'd like to have access to archives that contain publicly available data, since I'm likely to blog about the outcome and potentially use the data in examples. If there are publicly available archives downloadable via a URL, you can reply to the list - otherwise let me know how I could access your example. Thanks in advance for your help! Steve Baskauf [1] http://baskauf.blogspot.com/2016/10/guid-o-matic-meets-darwin-core-archives.... [2] http://www.gbif.org/resource/80636 -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees _______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-content _______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-content -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.eduhttp://vanderbilt.edu/trees
Sorry, used the wrong list ☹ Here is the email once again. Hi Steve, I guess you can use one of the GGBN archives, since we are using the MaterialSample core with many extensions, e.g. http://collections.nmnh.si.edu/ipt/archive.do?r=nmnh_materialsample_test Let me know if you have any questions. Best, Gabi Von: tdwg-content [mailto:tdwg-content-bounces@lists.tdwg.org] Im Auftrag von Steve Baskauf Gesendet: Dienstag, 25. Oktober 2016 15:34 An: Markus Döring; tdwg-content@lists.tdwg.org Betreff: Re: [tdwg-content] sample Darwin Core Archives of various flavors Markus and all, Thanks for the responses. I have several great datasets that I've downloaded from datasets at GBIF, so I have a lot to play with. I've got occurrence, taxon, and event core archives, which is great. I'd still be interested in an example of a material sample core archive if anyone has a good example, particularly if it had rich extension files linked to it. I'll probably report on my experimentation in a future blog post. Steve Markus Döring wrote: Hi Steve, you can find thousands of openly published dwc archives at the GBIF registry: http://www.gbif.org/dataset unless it is a biocase or digir resource each details page contains the link to the dwca on the right side. Taxon and Event core datasets are always dwc-as best, markus Von meinem iPhone gesendet Am 25.10.2016 um 06:35 schrieb Quentin Groom <quentin.groom@plantentuinmeise.be<mailto:quentin.groom@plantentuinmeise.be>>: Hi Steve, I have a sampling event dataset on GBIF, which is quite richly populated. http://www.gbif.org/dataset/5d784d06-fa1d-4f00-8cdc-663d04d26061 Regards Quentin Dr. Quentin Groom (Botany and Information Technology) Botanic Garden Meise Domein van Bouchout B-1860 Meise Belgium ORCID: 0000-0002-0596-5376<http://orcid.org/0000-0002-0596-5376> Landline; +32 (0) 226 009 20 ext. 364 FAX: +32 (0) 226 009 45 E-mail: quentin.groom@plantentuinmeise.be<mailto:quentin.groom@plantentuinmeise.be> Skype name: qgroom Website: www.botanicgarden.be<http://www.botanicgarden.be> On 25 October 2016 at 02:06, Steve Baskauf <steve.baskauf@vanderbilt.edu<mailto:steve.baskauf@vanderbilt.edu>> wrote: I have been playing around with turning Darwin Core Archives into RDF [1] and would like to extend my experiments to attempting to integrate data from archives that have very different core files. I have played with the dwcaMolluscsAndorra.zip Occurrence archive mentioned in Annex 3 of the DwC-A How-To Guide [2], but the Whales-DWC-A.zip file isn't available any more (I guess because of the demise of Google Code). A little bit of Google searching failed to turn up additional obvious example files. If anyone would be interested in making DwC-A archives available to me, I'd appreciate it. I'm particularly interested in archives that have cores other than Occurrence (although an Occurrence archive that has more complex data, including extensions, than the mollusc example would be welcome). If there are any MaterialSample or Event core arcives, that would be particularly interesting. Preferably, I'd like to have access to archives that contain publicly available data, since I'm likely to blog about the outcome and potentially use the data in examples. If there are publicly available archives downloadable via a URL, you can reply to the list - otherwise let me know how I could access your example. Thanks in advance for your help! Steve Baskauf [1] http://baskauf.blogspot.com/2016/10/guid-o-matic-meets-darwin-core-archives.... [2] http://www.gbif.org/resource/80636 -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees _______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-content _______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-content -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees
Hi Steve, Ah, now I remember what happened. GBIF no longer supports the MaterialSample core that’s why we switched back to the Occurrence core. There was honestly no difference in these two cores apart from occurrenceID/materialsampleID. To cover all required fields for a materialSample we created the materialSample GGBN extension. But in any case you have a couple of extensions associated here, especially the relatedResource-class is very important (at least for GGBN). So I guess it’s worth playing with it ☺ The full documentation of the GGBN extensions can be found at: http://terms.tdwg.org/wiki/GGBN_Data_Standard Best, Gabi Von: Steve Baskauf [mailto:steve.baskauf@vanderbilt.edu] Gesendet: Dienstag, 25. Oktober 2016 16:04 An: Dröge, Gabriele Cc: tdwg-content@lists.tdwg.org Betreff: Re: AW: [tdwg-content] sample Darwin Core Archives of various flavors Thanks, Gabi! I haven't actually tried to process the archive yet, but I unzipped the archive and looked at the meta.xml file. It's showing occurrence.txt as the core file and materialsample.txt as an extension file. I can still play with the data, but unless I'm mistaken, that archive would be classified as an occurrence core archive, right? I would assume that an actual "material sample core" archive would have a table designated as representing the dwc:MaterialSample calss (or analog) placed within the "core" element of the meta.xml file, rather than as an extension. Steve Dröge wrote: Sorry, used the wrong list ☹ Here is the email once again. Hi Steve, I guess you can use one of the GGBN archives, since we are using the MaterialSample core with many extensions, e.g. http://collections.nmnh.si.edu/ipt/archive.do?r=nmnh_materialsample_test Let me know if you have any questions. Best, Gabi Von: tdwg-content [mailto:tdwg-content-bounces@lists.tdwg.org] Im Auftrag von Steve Baskauf Gesendet: Dienstag, 25. Oktober 2016 15:34 An: Markus Döring; tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> Betreff: Re: [tdwg-content] sample Darwin Core Archives of various flavors Markus and all, Thanks for the responses. I have several great datasets that I've downloaded from datasets at GBIF, so I have a lot to play with. I've got occurrence, taxon, and event core archives, which is great. I'd still be interested in an example of a material sample core archive if anyone has a good example, particularly if it had rich extension files linked to it. I'll probably report on my experimentation in a future blog post. Steve Markus Döring wrote: Hi Steve, you can find thousands of openly published dwc archives at the GBIF registry: http://www.gbif.org/dataset unless it is a biocase or digir resource each details page contains the link to the dwca on the right side. Taxon and Event core datasets are always dwc-as best, markus Von meinem iPhone gesendet Am 25.10.2016 um 06:35 schrieb Quentin Groom <quentin.groom@plantentuinmeise.be<mailto:quentin.groom@plantentuinmeise.be>>: Hi Steve, I have a sampling event dataset on GBIF, which is quite richly populated. http://www.gbif.org/dataset/5d784d06-fa1d-4f00-8cdc-663d04d26061 Regards Quentin Dr. Quentin Groom (Botany and Information Technology) Botanic Garden Meise Domein van Bouchout B-1860 Meise Belgium ORCID: 0000-0002-0596-5376<http://orcid.org/0000-0002-0596-5376> Landline; +32 (0) 226 009 20 ext. 364 FAX: +32 (0) 226 009 45 E-mail: quentin.groom@plantentuinmeise.be<mailto:quentin.groom@plantentuinmeise.be> Skype name: qgroom Website: www.botanicgarden.be<http://www.botanicgarden.be> On 25 October 2016 at 02:06, Steve Baskauf <steve.baskauf@vanderbilt.edu<mailto:steve.baskauf@vanderbilt.edu>> wrote: I have been playing around with turning Darwin Core Archives into RDF [1] and would like to extend my experiments to attempting to integrate data from archives that have very different core files. I have played with the dwcaMolluscsAndorra.zip Occurrence archive mentioned in Annex 3 of the DwC-A How-To Guide [2], but the Whales-DWC-A.zip file isn't available any more (I guess because of the demise of Google Code). A little bit of Google searching failed to turn up additional obvious example files. If anyone would be interested in making DwC-A archives available to me, I'd appreciate it. I'm particularly interested in archives that have cores other than Occurrence (although an Occurrence archive that has more complex data, including extensions, than the mollusc example would be welcome). If there are any MaterialSample or Event core arcives, that would be particularly interesting. Preferably, I'd like to have access to archives that contain publicly available data, since I'm likely to blog about the outcome and potentially use the data in examples. If there are publicly available archives downloadable via a URL, you can reply to the list - otherwise let me know how I could access your example. Thanks in advance for your help! Steve Baskauf [1] http://baskauf.blogspot.com/2016/10/guid-o-matic-meets-darwin-core-archives.... [2] http://www.gbif.org/resource/80636 -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees _______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-content _______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-content -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees -- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees
It's taken me a while to finish this project, but I have successfully turned Darwin Core Archives from GBIF and GGBN having Event, Taxon, and Occurrence cores into RDF, and merged them with RDF generated from an EOL traitbank archive and the pre-existing Bioimages RDF. The resulting graph describes over 13 thousand distinct organisms and contains 8 million triples. I've compressed the entire non-Bioimages RDF graph into a downloadable zip file (the Bioimages graph is available elsewhere) so that anyone can play with it. It's also available for querying at Vanderbilt's Heard Library SPARQL endpoint. You can read the gory details of the experiment at http://baskauf.blogspot.com/2016/11/guid-o-matic-meets-dwc-rdf-octopus.html and there should be enough details that anyone who is serious about this could replicate the exercise. I doubt that many people will, but you are also welcome to read the blog post the same way I read National Geographic: skim the high points and look at the pictures. You might read the descriptions of each of the five datasets and look at there octopus diagrams, then skip to the end and try pasting the SPARQL queries into the endpoint to try them out for yourself (or hack them to find out more interesting things). Thanks Quentin Groom, Willem Coetzer, Gabi Dröge, and Anne Thessen for sharing their cool datasets. I'm excited about this and am looking forward to playing more with the big merged graph when I have more time. Steve Steve Baskauf wrote:
Markus and all,
Thanks for the responses. I have several great datasets that I've downloaded from datasets at GBIF, so I have a lot to play with. I've got occurrence, taxon, and event core archives, which is great. I'd still be interested in an example of a material sample core archive if anyone has a good example, particularly if it had rich extension files linked to it. I'll probably report on my experimentation in a future blog post.
Steve
Markus Döring wrote:
Hi Steve, you can find thousands of openly published dwc archives at the GBIF registry: http://www.gbif.org/dataset
unless it is a biocase or digir resource each details page contains the link to the dwca on the right side. Taxon and Event core datasets are always dwc-as
best, markus
Von meinem iPhone gesendet
Am 25.10.2016 um 06:35 schrieb Quentin Groom <quentin.groom@plantentuinmeise.be <mailto:quentin.groom@plantentuinmeise.be>>:
Hi Steve, I have a sampling event dataset on GBIF, which is quite richly populated. http://www.gbif.org/dataset/5d784d06-fa1d-4f00-8cdc-663d04d26061 Regards Quentin
Dr. Quentin Groom (Botany and Information Technology)
Botanic Garden Meise Domein van Bouchout B-1860 Meise Belgium
ORCID: 0000-0002-0596-5376 <http://orcid.org/0000-0002-0596-5376>
Landline; +32 (0) 226 009 20 ext. 364 FAX: +32 (0) 226 009 45
E-mail: quentin.groom@plantentuinmeise.be <mailto:quentin.groom@plantentuinmeise.be> Skype name: qgroom Website: www.botanicgarden.be <http://www.botanicgarden.be>
On 25 October 2016 at 02:06, Steve Baskauf <steve.baskauf@vanderbilt.edu <mailto:steve.baskauf@vanderbilt.edu>> wrote:
I have been playing around with turning Darwin Core Archives into RDF [1] and would like to extend my experiments to attempting to integrate data from archives that have very different core files. I have played with the dwcaMolluscsAndorra.zip Occurrence archive mentioned in Annex 3 of the DwC-A How-To Guide [2], but the Whales-DWC-A.zip file isn't available any more (I guess because of the demise of Google Code). A little bit of Google searching failed to turn up additional obvious example files.
If anyone would be interested in making DwC-A archives available to me, I'd appreciate it. I'm particularly interested in archives that have cores other than Occurrence (although an Occurrence archive that has more complex data, including extensions, than the mollusc example would be welcome). If there are any MaterialSample or Event core arcives, that would be particularly interesting. Preferably, I'd like to have access to archives that contain publicly available data, since I'm likely to blog about the outcome and potentially use the data in examples. If there are publicly available archives downloadable via a URL, you can reply to the list - otherwise let me know how I could access your example.
Thanks in advance for your help! Steve Baskauf
[1] http://baskauf.blogspot.com/2016/10/guid-o-matic-meets-darwin-core-archives.... <http://baskauf.blogspot.com/2016/10/guid-o-matic-meets-darwin-core-archives.html> [2] http://www.gbif.org/resource/80636 <http://www.gbif.org/resource/80636>
-- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences
postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A.
delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235
office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu <http://bioimages.vanderbilt.edu> http://vanderbilt.edu/trees
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-- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences
postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A.
delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235
office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees
-- Steven J. Baskauf, Ph.D., Senior Lecturer Vanderbilt University Dept. of Biological Sciences postal mail address: PMB 351634 Nashville, TN 37235-1634, U.S.A. delivery address: 2125 Stevenson Center 1161 21st Ave., S. Nashville, TN 37235 office: 2128 Stevenson Center phone: (615) 343-4582, fax: (615) 322-4942 If you fax, please phone or email so that I will know to look for it. http://bioimages.vanderbilt.edu http://vanderbilt.edu/trees
participants (5)
-
Dröge, Gabriele -
Markus Döring -
Quentin Groom -
Steve Baskauf -
Tim Robertson