Hi all,
I won't be able to attend to TDWG this year - but I'm in for an IRC meeting on the 21st.
best regards,
Bart.
Pitty. But still would you be available for a telephone meeting on Friday 21th?
Anybody else going to TDWG?
If possible I would like to organize a meeting about our little subgroup.
Cheers.
On 12/07/2007, at 17:41, Tim Sutton wrote:
Hi
I wont be able to attend this year. Will be great if someone can present ours tuff though.
Regards
Tim
2007/7/10, Javier de la Torre jatorre@gmail.com:
Hi all,
is there anybody thinking in attending TDWG this year? I was just lookig at the program and wondering if we should present and
abstract
to present this. Renato already asked me to present in his slot for "Integrating biodiversity data - 2" at 11:00 12:30. That is ok for me. This year i will not be able to make it the whole week so i
plan
to travel on wednesday late 19th.
But if there is people from the team around... we could make try to find a slot to work further on this... specially on creating documentation to go for funding for next workshop :) If there is
many
people away we can maybe ask for conference equipment (they do it a lot here in OGC and is cool). Sooo what about Friday at 17:30 for a meeting?
Cheers. _______________________________________________ biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
-- Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
--
Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
Message: 2 Date: Sun, 15 Jul 2007 18:54:27 -0300 From: "Tim Sutton" tim@linfiniti.com Subject: Re: [Biogeosdi] OMWS getAlgorithms To: "Javier de la Torre" jatorre@gmail.com Cc: biogeosdi@lists.tdwg.org Message-ID: d368056f0707151454w722d1888ga6b0653671d1af3a@mail.gmail.com Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Hi
Im back now. I will try to resolve the rest of the issues in the Parallels vm (relating to the om service) this week and upload a new image. Did you give your ogc presentation already?
Regards
Tim
2007/7/13, Javier de la Torre jatorre@gmail.com:
Dont worry,
As I said I hacked it on the client side. And yes I did not manage to actually run models but I am a little bit lost there so I was trying to make sure that the rest is working...
When do you get back from your little country? How is extrema going? I miss it!
Cheers.
On 12/07/2007, at 17:39, Tim Sutton wrote:
Hi Renato & Javi
A quick note from an icafe in extreme... Renato I discovered there is a problem with the xml coming back from teh svm alg - open it with ffox to see the error. Javi for now you
can
resolve teh issue by simply removing /usr/local/lib/openmodeller/libomsvm.so . Also it seems the cron job for the om service is not running - in the parallels image the
crontab
for www-data is set up but I think you may need to check the cron configs to ensure that www-data is allowed to run cronjobs.
Hope that helps!
Regards
Tim
2007/7/9, Javier de la Torre jatorre@gmail.com:
I am using the OMWS that Tim left me in a parallels image. I
believe
it is the last version as it is taken from repository and
compiled...
In any case I am not sure at all.
I just made a hack on my side and now is working so I will wait for Tim to come back and figure out this as I dont know how
openmodeller
has been installed on this debian that I have.
Cheers.
Javier.
On 09/07/2007, at 19:18, Renato De Giovanni wrote:
Hello Javi,
Can you tell me which omws service address are you using?
The library does escape the special characters &, < and >, but
I've
just noticed that double quotes were not being escaped (fixed
now).
The library returns content in latin1. However, the soap server
will
always return content in utf-8.
I tested with the "official" omws service (http://modeller.cria.org.br/cgi-bin/om_soap_server.cgi) and it
seems
to be working with the most recent list of algorithms. I've
dumped
the response and copied to a static document if you want to
check:
http://www.cria.org.br/~renato/omws_alg_metadata_dump.xml
Maybe you're using another service address with an older version
of
the library? Or maybe there's something doing some conversions between the real raw XML you receive and your parser?
Regards,
Renato
On 9 Jul 2007 at 13:19, Javier de la Torre wrote:
Hey all,
Finally I had to hack two things to handle incorrect messages
from
OMWS. I could not find where the metadata about the algorithms
is
stored so I hack in the biogeosdi code... that is what I made:
//HACK BECUASE OMWS IS RETURNING INVALID XML $rawXml = str_replace("&oldid","&oldid",$rawXml); $rawXml = str_replace("& Shawe","& Shawe",$rawXml); $rawXml = utf8_encode($rawXml); //HACK FINISHEDThe first two are to handle the not scaped parethesis. The
third one
is to encode the result as UTF8 because if not is not valid XML without a encoding definition, which the response does not
include.
If the encoding is not defined I think the default is UTF8 and
this
seems to be latin1, but in any case I would really recommend
being
explicit about the encoding bein used.
Cheers.
biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
-- Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
--
Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
Message: 3 Date: Sun, 15 Jul 2007 23:56:44 +0200 From: Javier de la Torre jatorre@gmail.com Subject: Re: [Biogeosdi] Someone attending TDWG To: "Tim Sutton" tim@linfiniti.com Cc: biogeosdi@lists.tdwg.org Message-ID: 4397B2AB-E4AA-459B-BB5A-0788438F120F@gmail.com Content-Type: text/plain; charset=US-ASCII; delsp=yes; format=flowed
Yes, sure we can do it through IRC, but the idea is that there might be people at TDWG that are interested in what we do and therefore I would prefer to open the discussion for everybody there...
I will ask if there will be teleconferencing support at Bratislava.
Cheers.
PD: agghhh I am having problems with openModeller web services installed on the parallels image... and any advice on the cron work that i have to set up would be appreciated.
On 15/07/2007, at 23:39, Tim Sutton wrote:
Hi Javi
Sure I will be available - preferably early in the day brazil time for me. If we are meeting with all the workshop participants a meeting on IRC will be better...?
Regards
Tim
2007/7/13, Javier de la Torre jatorre@gmail.com:
Hi Tim,
Pitty. But still would you be available for a telephone meeting on Friday 21th?
Anybody else going to TDWG?
If possible I would like to organize a meeting about our little subgroup.
Cheers.
On 12/07/2007, at 17:41, Tim Sutton wrote:
Hi
I wont be able to attend this year. Will be great if someone can present ours tuff though.
Regards
Tim
2007/7/10, Javier de la Torre jatorre@gmail.com:
Hi all,
is there anybody thinking in attending TDWG this year? I was just lookig at the program and wondering if we should present and
abstract
to present this. Renato already asked me to present in his slot
for
"Integrating biodiversity data - 2" at 11:00 12:30. That is ok for me. This year i will not be able to make it the whole week so i
plan
to travel on wednesday late 19th.
But if there is people from the team around... we could make
try to
find a slot to work further on this... specially on creating documentation to go for funding for next workshop :) If there
is many
people away we can maybe ask for conference equipment (they do
it a
lot here in OGC and is cool). Sooo what about Friday at 17:30 for a meeting?
Cheers. _______________________________________________ biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
-- Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
-- Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
Message: 4 Date: Mon, 16 Jul 2007 10:26:00 +1200 From: Dave Vieglais vieglais@ku.edu Subject: Re: [Biogeosdi] Someone attending TDWG To: "Tim Sutton" tim@linfiniti.com Cc: biogeosdi@lists.tdwg.org Message-ID: 4C8B1D7A-3209-48D1-A813-9C70D2E67CD4@ku.edu Content-Type: text/plain; charset=US-ASCII; delsp=yes; format=flowed
I was hoping to get to TDWG but now can't due to some family obligations.
Dave V.
On Jul 16, 2007, at 09:39, Tim Sutton wrote:
Hi Javi
Sure I will be available - preferably early in the day brazil time for me. If we are meeting with all the workshop participants a meeting on IRC will be better...?
Regards
Tim
2007/7/13, Javier de la Torre jatorre@gmail.com:
Hi Tim,
Pitty. But still would you be available for a telephone meeting on Friday 21th?
Anybody else going to TDWG?
If possible I would like to organize a meeting about our little subgroup.
Cheers.
On 12/07/2007, at 17:41, Tim Sutton wrote:
Hi
I wont be able to attend this year. Will be great if someone can present ours tuff though.
Regards
Tim
2007/7/10, Javier de la Torre jatorre@gmail.com:
Hi all,
is there anybody thinking in attending TDWG this year? I was just lookig at the program and wondering if we should present and
abstract
to present this. Renato already asked me to present in his slot
for
"Integrating biodiversity data - 2" at 11:00 12:30. That is ok for me. This year i will not be able to make it the whole week so i
plan
to travel on wednesday late 19th.
But if there is people from the team around... we could make
try to
find a slot to work further on this... specially on creating documentation to go for funding for next workshop :) If there
is many
people away we can maybe ask for conference equipment (they do
it a
lot here in OGC and is cool). Sooo what about Friday at 17:30 for a meeting?
Cheers. _______________________________________________ biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
-- Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
-- Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net _______________________________________________ biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
Message: 5 Date: Mon, 16 Jul 2007 00:27:28 +0200 From: Javier de la Torre jatorre@gmail.com Subject: Re: [Biogeosdi] OMWS getAlgorithms To: "Tim Sutton" tim@linfiniti.com Cc: biogeosdi@lists.tdwg.org Message-ID: 2E41BF87-2452-4BD6-BA68-E02452FE0408@gmail.com Content-Type: text/plain; charset=US-ASCII; delsp=yes; format=flowed
Hi Tim,
I have been continue taking a look at the parallels image... there were several configs wrong in regard to the occurrences part... hopefully now they are solved... at least in my parallels now is working fine.
But I do not manage to run models... I am trying trough the HTML, once this is ready i will go for the Flex one ok?. When running the model after a while I get this error back:
Warning: SimpleXMLElement::__construct() [function.SimpleXMLElement--- construct]: namespace error : Namespace prefix SOAP-ENV on Fault is not defined in /opt/biogeosdiTrunk/backend/services/OmService.php on line 346
Warning: SimpleXMLElement::__construct() [function.SimpleXMLElement--- construct]: <?xml version='1.0'?>SOAP-ENV:Fault<faultcode>SOAP- ENV:Server</faultcode><faul in /opt/biogeosdiTrunk/backend/services/ OmService.php on line 346
Warning: SimpleXMLElement::__construct() [function.SimpleXMLElement--- construct]: ^ in /opt/biogeosdiTrunk/backend/services/OmService.php on line 346
Fatal error: Call to a member function asXml() on a non-object in / opt/biogeosdiTrunk/backend/services/OmService.php on line 347
This is because I eventually get this from the omws:
<?xml version='1.0'?><SOAP-ENV:Fault><faultcode>SOAP-ENV:Server</
faultcode><faultstring>Model unavailable</faultstring></SOAP-ENV:Fault>
So... Any idea os what is going wrong?
Cheers.
On 15/07/2007, at 23:54, Tim Sutton wrote:
Hi
Im back now. I will try to resolve the rest of the issues in the Parallels vm (relating to the om service) this week and upload a new image. Did you give your ogc presentation already?
Regards
Tim
2007/7/13, Javier de la Torre jatorre@gmail.com:
Dont worry,
As I said I hacked it on the client side. And yes I did not manage to actually run models but I am a little bit lost there so I was trying to make sure that the rest is working...
When do you get back from your little country? How is extrema going? I miss it!
Cheers.
On 12/07/2007, at 17:39, Tim Sutton wrote:
Hi Renato & Javi
A quick note from an icafe in extreme... Renato I discovered there is a problem with the xml coming back
from
teh svm alg - open it with ffox to see the error. Javi for now
you can
resolve teh issue by simply removing /usr/local/lib/openmodeller/libomsvm.so . Also it seems the cron
job
for the om service is not running - in the parallels image the
crontab
for www-data is set up but I think you may need to check the cron configs to ensure that www-data is allowed to run cronjobs.
Hope that helps!
Regards
Tim
2007/7/9, Javier de la Torre jatorre@gmail.com:
I am using the OMWS that Tim left me in a parallels image. I
believe
it is the last version as it is taken from repository and
compiled...
In any case I am not sure at all.
I just made a hack on my side and now is working so I will wait
for
Tim to come back and figure out this as I dont know how
openmodeller
has been installed on this debian that I have.
Cheers.
Javier.
On 09/07/2007, at 19:18, Renato De Giovanni wrote:
Hello Javi,
Can you tell me which omws service address are you using?
The library does escape the special characters &, < and >,
but I've
just noticed that double quotes were not being escaped (fixed
now).
The library returns content in latin1. However, the soap server
will
always return content in utf-8.
I tested with the "official" omws service (http://modeller.cria.org.br/cgi-bin/om_soap_server.cgi) and it
seems
to be working with the most recent list of algorithms. I've
dumped
the response and copied to a static document if you want to
check:
http://www.cria.org.br/~renato/omws_alg_metadata_dump.xml
Maybe you're using another service address with an older
version of
the library? Or maybe there's something doing some conversions between the real raw XML you receive and your parser?
Regards,
Renato
On 9 Jul 2007 at 13:19, Javier de la Torre wrote:
> Hey all, > > Finally I had to hack two things to handle incorrect
messages from
> OMWS. I could not find where the metadata about the
algorithms is
> stored so I hack in the biogeosdi code... that is what I made: > > //HACK BECUASE OMWS IS RETURNING INVALID XML > $rawXml = str_replace("&oldid","&oldid",$rawXml); > $rawXml = str_replace("& Shawe","& Shawe",
$rawXml);
> $rawXml = utf8_encode($rawXml); > //HACK FINISHED > > The first two are to handle the not scaped parethesis. The
third one
> is to encode the result as UTF8 because if not is not valid XML > without a encoding definition, which the response does not
include.
> If the encoding is not defined I think the default is UTF8 and
this
> seems to be latin1, but in any case I would really recommend
being
> explicit about the encoding bein used. > > Cheers.
biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
-- Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
-- Tim Sutton QGIS Project Steering Committee Member - Release Manager Visit http://qgis.org for a great open source GIS openModeller Desktop Developer Visit http://openModeller.sf.net for a great open source ecological niche modelling tool Home Page: http://tim.linfiniti.com Skype: timlinux Irc: timlinux on #qgis at freenode.net
biogeosdi mailing list biogeosdi@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/biogeosdi
End of biogeosdi Digest, Vol 8, Issue 14