Excellent!
What is the status of mapping the remaining fields here:
<extension encoding="UTF-8" fieldsTerminatedBy="\t" linesTerminatedBy="\n" fieldsEnclosedBy="" ignoreHeaderLines="1" rowType=" http://rs.gbif.org/terms/1.0/DNADerivedData">
<files>
<location>dnaderiveddata.txt</location>
</files>
<coreid index="0" />
<field index="1" term="https://w3id.org/gensc/terms/MIXS:0000012"/>
<field index="2" term="https://w3id.org/gensc/terms/MIXS:0000013"/>
<field index="3" term="https://w3id.org/gensc/terms/MIXS:0000014"/>
<field index="4" term="https://w3id.org/gensc/terms/MIXS:0000044"/>
<field index="5" term="https://w3id.org/gensc/terms/MIXS:0000090"/>
<field index="6" term="http://rs.gbif.org/terms/pcr_primer_forward"/>
<field index="7" term="http://rs.gbif.org/terms/pcr_primer_reverse"/>
<field index="8" term="http://rs.gbif.org/terms/pcr_primer_name_forward "/>
<field index="9" term="http://rs.gbif.org/terms/pcr_primer_name_reverse "/>
<field index="10" term="http://rs.gbif.org/terms/pcr_primer_reference"/>
<field index="11" term="http://rs.gbif.org/terms/dna_sequence"/>
</extension>
Some are in MIxS but not as 1:1; e.g. MIxS has a combined field for primers whereas many databases separate these into two. Also it looks like the URIs like http://rs.gbif.org/terms/pcr_primer_forward don't resolve?
On Wed, Sep 29, 2021 at 7:44 AM Chris H only1chunts@gmail.com wrote:
Good news! Thank you Thomas for sharing.
I am forwarding this onto the GSC-MIxS group as I’m sure they will be pleased to see real-world usage of the work we do.
Thanks
Chris
*From: *Thomas Stjernegaard Jeppesen tsjeppesen@gbif.org *Sent: *29 September 2021 15:09 *To: *dwc-mixs@lists.tdwg.org *Subject: *[dwc-mixs] Use of the MIxS-based DWC extension
Hi All
I just wanted to let you know that GBIF now starts to see incoming data using the MIxS-based DNA derived data extension for DwC.
A few examples:
https://www.gbif.org/dataset/e0b59ee7-19ae-4eb0-9217-33317fb50d47
- Example occurrence record:
https://www.gbif.org/occurrence/3357191905 (scroll to the bottom to see the MIxS / DNA data)
https://www.gbif.org/dataset/9e29a2fe-d780-48a8-a93f-9ce041f9202f
Example occurrence record: https://www.gbif.org/occurrence/3356905303
https://www.gbif.org/dataset/040c5662-da76-4782-a48e-cdea1892d14c
Example occurrence: https://www.gbif.org/occurrence/2979635351
Best wishes
*Thomas Stjernegaard Jeppesen*
Web developer
orcid.org/0000-0003-1691-239X
*Global Biodiversity Information Facility*
Universitetsparken 15, 2100 København Ø
www.gbif.org | www.catalogueoflife.org/
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