Hi all, As trailed in a previous meeting, I've finished putting together and deploying a little web app which uses the GBIF API to calculate MIDS scores. You can access it here: https://naturalhistorymuseum.github.io/gamc and the source is here: https://github.com/naturalhistorymuseum/gamc. From the home page just search and select your GBIF occurrence dataset, the app then runs some calculations by querying the GBIF API a few (~25) times, and then you'll see a couple of charts showing your dataset's record counts against the 4 MIDS levels as well as a more detailed breakdown of record counts by MIDS element. For example, here's the NHM London's breakdown<https://naturalhistorymuseum.github.io/gamc/dashboard/7e380070-f762-11e1-a439-00145eb45e9a>. For more info about how it works, check out the about page: https://naturalhistorymuseum.github.io/gamc/about. Specifically of interest to this group will be the how does it work<https://naturalhistorymuseum.github.io/gamc/about#how-does-it-work> section and the caveats<https://naturalhistorymuseum.github.io/gamc/about#caveats>. Any and all feedback welcome, including suggestions for changes (particularly around the mapping where we are somewhat limited, again see the caveats). The primary goal of this tool at the moment is to help people understand and explore their own MIDS scores, but when GBIF implement MIDS in their systems I fully expect it to become redundant. Additionally, it may be worth exploring a GeoCASe API based version of this too (and it would be pretty trivial to add I expect), though this may have limited usefulness given the discussion we had in the last meeting about the general lack of availability of datasets that cover all earth science disciplines. All the best, Josh ---------------------------------------------------------------------------------------------------------------------------------------- Josh Humphries (he/him) | Head of Science Data Platforms | Digital, Data & Informatics | NHM London Email: j.humphries@nhm.ac.uk
Hi I've had a quick test of the tool on RBGE Herbarium data and it looks good. It would be good to discuss the mapping that may not be accessible through the API - possible to request GBIF to add some additional terms into their API for the future? Thanks so much for creating this as an additional resource. Elspeth ________________________________ From: Josh Humphries <j.humphries@nhm.ac.uk> Sent: 22 July 2024 11:49 To: tdwg-mids@lists.tdwg.org <tdwg-mids@lists.tdwg.org> Subject: [TDWG-MIDS] GBIF API MIDS Calculator Hi all, As trailed in a previous meeting, I've finished putting together and deploying a little web app which uses the GBIF API to calculate MIDS scores. You can access it here: https://naturalhistorymuseum.github.io/gamc and the source is here: https://github.com/naturalhistorymuseum/gamc.
From the home page just search and select your GBIF occurrence dataset, the app then runs some calculations by querying the GBIF API a few (~25) times, and then you'll see a couple of charts showing your dataset's record counts against the 4 MIDS levels as well as a more detailed breakdown of record counts by MIDS element. For example, here's the NHM London's breakdown<https://naturalhistorymuseum.github.io/gamc/dashboard/7e380070-f762-11e1-a439-00145eb45e9a>.
For more info about how it works, check out the about page: https://naturalhistorymuseum.github.io/gamc/about. Specifically of interest to this group will be the how does it work<https://naturalhistorymuseum.github.io/gamc/about#how-does-it-work> section and the caveats<https://naturalhistorymuseum.github.io/gamc/about#caveats>. Any and all feedback welcome, including suggestions for changes (particularly around the mapping where we are somewhat limited, again see the caveats). The primary goal of this tool at the moment is to help people understand and explore their own MIDS scores, but when GBIF implement MIDS in their systems I fully expect it to become redundant. Additionally, it may be worth exploring a GeoCASe API based version of this too (and it would be pretty trivial to add I expect), though this may have limited usefulness given the discussion we had in the last meeting about the general lack of availability of datasets that cover all earth science disciplines. All the best, Josh ---------------------------------------------------------------------------------------------------------------------------------------- Josh Humphries (he/him) | Head of Science Data Platforms | Digital, Data & Informatics | NHM London Email: j.humphries@nhm.ac.uk The Royal Botanic Garden Edinburgh<https://www.rbge.org.uk/> is a charity registered in Scotland (No SC007983) | Support Us<https://www.rbge.org.uk/support-us> This notice applies to this email and to any other email subsequently sent by anyone at RBGE and appearing in the same chain of email correspondence. References below to "this email" should be read accordingly. This e-mail and its attachments (if any) are confidential, may be protected by copyright and may be privileged. If you receive this e-mail in error, notify us immediately by reply e-mail, delete it and do not use, disclose or copy it. Unless we expressly say otherwise in this e-mail, this e-mail does not create, form part of, or vary, any contractual or unilateral obligation. No liability is accepted for viruses and it is your responsibility to scan attachments (if any). Where this e-mail is unrelated to the business of RBGE, the opinions expressed within this e-mail are the opinions of the sender and do not necessarily constitute those of RBGE. RBGE emails are filtered and monitored.
Dear all, I got the MIDS documentation page up: https://dev.mids.dissco.tech/. It is a quick and dirty draft as I was a bit short on time, but hopefully it gives some indication how it could look like. As mentioned it is hosted on a dissco domain as I got easy access to that, but we can easily move it (containerised the app). Several people are admin of the github repo <https://github.com/DiSSCo/mids-documentation> (also in DiSSCo) so they should be able to change things, or add new people. If you want to push your changes to the website, please contact Soulaine ( soulaine.theocharides@naturalis.nl), one of our devs. It is no work at all, but we don't have a full CD pipeline in place yet. Ok, I think that is it, I will be on holiday for a while but hope to continue when I get back. Kind regards, Sam Op ma 22 jul 2024 om 13:34 schreef Elspeth Haston <EHaston@rbge.org.uk>:
Hi
I've had a quick test of the tool on RBGE Herbarium data and it looks good. It would be good to discuss the mapping that may not be accessible through the API - possible to request GBIF to add some additional terms into their API for the future?
Thanks so much for creating this as an additional resource.
Elspeth
------------------------------ *From:* Josh Humphries <j.humphries@nhm.ac.uk> *Sent:* 22 July 2024 11:49 *To:* tdwg-mids@lists.tdwg.org <tdwg-mids@lists.tdwg.org> *Subject:* [TDWG-MIDS] GBIF API MIDS Calculator
Hi all,
As trailed in a previous meeting, I've finished putting together and deploying a little web app which uses the GBIF API to calculate MIDS scores. You can access it here: https://naturalhistorymuseum.github.io/gamc and the source is here: https://github.com/naturalhistorymuseum/gamc.
From the home page just search and select your GBIF occurrence dataset, the app then runs some calculations by querying the GBIF API a few (~25) times, and then you'll see a couple of charts showing your dataset's record counts against the 4 MIDS levels as well as a more detailed breakdown of record counts by MIDS element. For example, here's the NHM London's breakdown <https://naturalhistorymuseum.github.io/gamc/dashboard/7e380070-f762-11e1-a439-00145eb45e9a> .
For more info about how it works, check out the about page: https://naturalhistorymuseum.github.io/gamc/about. Specifically of interest to this group will be the how does it work <https://naturalhistorymuseum.github.io/gamc/about#how-does-it-work> section and the caveats <https://naturalhistorymuseum.github.io/gamc/about#caveats>.
Any and all feedback welcome, including suggestions for changes (particularly around the mapping where we are somewhat limited, again see the caveats). The primary goal of this tool at the moment is to help people understand and explore their own MIDS scores, but when GBIF implement MIDS in their systems I fully expect it to become redundant. Additionally, it may be worth exploring a GeoCASe API based version of this too (and it would be pretty trivial to add I expect), though this may have limited usefulness given the discussion we had in the last meeting about the general lack of availability of datasets that cover all earth science disciplines.
All the best,
Josh
--------------------------------------------------------------------------------------------------------- ------------------------------- Josh Humphries (he/him) | Head of Science Data Platforms | Digital, Data & Informatics | NHM London Email: j.humphries@nhm.ac.uk
The Royal Botanic Garden Edinburgh <https://www.rbge.org.uk/> is a charity registered in Scotland (No SC007983) | Support Us <https://www.rbge.org.uk/support-us>
This notice applies to this email and to any other email subsequently sent by anyone at RBGE and appearing in the same chain of email correspondence. References below to "this email" should be read accordingly. This e-mail and its attachments (if any) are confidential, may be protected by copyright and may be privileged. If you receive this e-mail in error, notify us immediately by reply e-mail, delete it and do not use, disclose or copy it. Unless we expressly say otherwise in this e-mail, this e-mail does not create, form part of, or vary, any contractual or unilateral obligation. No liability is accepted for viruses and it is your responsibility to scan attachments (if any). Where this e-mail is unrelated to the business of RBGE, the opinions expressed within this e-mail are the opinions of the sender and do not necessarily constitute those of RBGE. RBGE emails are filtered and monitored. _______________________________________________ tdwg-mids mailing list -- tdwg-mids@lists.tdwg.org To unsubscribe send an email to tdwg-mids-leave@lists.tdwg.org
participants (3)
-
Elspeth Haston -
Josh Humphries -
Sam Leeflang