Re: [tdwg-humboldt] tdwg-humboldt Digest, Vol 6, Issue 2
John, Thanks, I either forgot about this pub/group or never knew about them. I will reach out to them, it would be great to have bee collaborators from Brazil as well as working on plant-pollinator interaction terms. Cheers, Neil Neil S. Cobb, Symbiota Collections of Arthropods Network (SCAN) <https://scan-bugs.org/portal/index.php> Biodiversity Outreach Network <https://www.bon-earth.org/> Northern Arizona University Flagstaff, AZ 86011 Neil.Cobb@nau.edu neilscobb@gmail.com (Mobile Office) 928-607-4075 Skype Name: neil_cobb Calendar: https://doodle.com/neilcobb Virtual Meeting: Contact for Zoom URL ORCID https://orcid.org/0000-0002-6155-9444 On Fri, May 7, 2021 at 5:00 AM <tdwg-humboldt-request@lists.tdwg.org> wrote:
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Today's Topics:
1. Re: Humboldt Core use cases (John Wieczorek)
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Message: 1 Date: Fri, 7 May 2021 00:37:13 -0300 From: John Wieczorek <tuco@berkeley.edu> To: Humboldt Core TG <tdwg-humboldt@lists.tdwg.org> Subject: Re: [tdwg-humboldt] Humboldt Core use cases Message-ID: < CAHwKGGdoXZq7FvOnwFoq2HHYU289+mJ9VHwqOfjGf1zkii0mHQ@mail.gmail.com> Content-Type: text/plain; charset="utf-8"
Hi Neil,
I think demonstrating a case for inventories with interactions would be particularly compelling. Working with the Plant-Pollinator Interactions Group in Brazil (https://github.com/BioComp-USP/rebipp-data-standard) has shown that there are many core (pun partially intended) issues in common in terms (another pun?) of shared hierarchical Event structuring.
Cheers,
John
On Wed, Apr 28, 2021 at 4:09 AM Neil Stanley Cobb <Neil.Cobb@nau.edu> wrote:
Hi,
I have popped into a couple of working group meetings in the past three weeks. I am not sure I can attend meetings on a regular basis. My primary interest is two-fold; 1) want to extend SCAN <https://scan-bugs.org/portal/index.php>?s ability to incorporate fields from arthropod projects that incorporate inventory/monitoring that DwC does not provide. The biggest use case involves bee/pollinator data sets. We are starting to incorporate files from ecological studies on bees/pollinators. All of the cases so far would benefit from adopting a HC set of fields, however the form (e.g., DwC extensions). I am also interested in monitoring projects and pitfall data (see below); and 2) I do want to provide feedback to make HC as robust and effective as possible.
*Bee/Pollinator Projects*
https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=275 Drought
and Habitat Fragmentation on Native Bee Assemblages
https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=270 Plant?pollinator
community assembly across wildfire gradients
https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=272
Predicting changes in bee assemblages following state transitions
https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=278
Maine State Museum - Brianne Du Clos Pollinator Study *Mosquito Monitoring (i.e., repeated measures)*
https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=181
VectorBase (Bioinformatics Resource for Invertebrate Vectors of Human Pathogens) Ground-Dwelling Arthropods (pitfalls)
Scores of data in SCAN were generated from pitfall studies. Currently, there is no way to compare across datasets (i.e. define ?effort? so numbers are expressed in common currency). Sand Brantley is the only publication I know where effort was defined in order to compare spider assemblages from two separate elevation gradients (attached). We might be able to retroactively populate ?effort? metrics for over a million records and a standard to guide the process would be very helpful.
Cheers,
Neil
Neil S. Cobb,
Symbiota Collections of Arthropods Network (SCAN) <https://scan-bugs.org/portal/index.php>
Biodiversity Outreach Network <https://www.bon-earth.org/>
Northern Arizona University Flagstaff, AZ 86011
Neil.Cobb@nau.edu neilscobb@gmail.com
(Mobile Office) 928-607-4075
Virtual Office: https://us02web.zoom.us/j/82515787249
ORCID https://orcid.org/0000-0002-6155-9444
Do you know where all 200,000 North American arthropod species live?
_______________________________________________ tdwg-humboldt mailing list tdwg-humboldt@lists.tdwg.org http://lists.tdwg.org/mailman/listinfo/tdwg-humboldt
Hello HC people, I got an invite from Corinna Gries, one of the key people re: ecology data in the US. I thought it would be useful for many of us to learn the EDI ways; I only how it works in theory, so registering. How to publish data in the EDI data repository – an overview Event by Environmental Data Initiative<https://www.linkedin.com/company/environmental-data-initiative/> Online May 18, 2021, 8:00 PM - 9:00 PM (Copenhagen time) Add to calendar Registration link https://us02web.zoom.us/meeting/register/tZYvcOCtrTkoG9Q__fJ48z-x3gQvIK974Tu... Thanks, Dmitry From: tdwg-humboldt <tdwg-humboldt-bounces@lists.tdwg.org> On Behalf Of Neil Cobb Sent: 9 May, 2021 21:08 To: tdwg-humboldt@lists.tdwg.org Subject: Re: [tdwg-humboldt] tdwg-humboldt Digest, Vol 6, Issue 2 John, Thanks, I either forgot about this pub/group or never knew about them. I will reach out to them, it would be great to have bee collaborators from Brazil as well as working on plant-pollinator interaction terms. Cheers, Neil Neil S. Cobb, Symbiota Collections of Arthropods Network (SCAN)<https://scan-bugs.org/portal/index.php> Biodiversity Outreach Network<https://www.bon-earth.org/> Northern Arizona University Flagstaff, AZ 86011 Neil.Cobb@nau.edu<mailto:Neil.Cobb@nau.edu> neilscobb@gmail.com<http://neilscobb@gmail.com> (Mobile Office) 928-607-4075 Skype Name: neil_cobb Calendar: https://doodle.com/neilcobb Virtual Meeting: Contact for Zoom URL ORCID https://orcid.org/0000-0002-6155-9444 On Fri, May 7, 2021 at 5:00 AM <tdwg-humboldt-request@lists.tdwg.org<mailto:tdwg-humboldt-request@lists.tdwg.org>> wrote: Send tdwg-humboldt mailing list submissions to tdwg-humboldt@lists.tdwg.org<mailto:tdwg-humboldt@lists.tdwg.org> To subscribe or unsubscribe via the World Wide Web, visit http://lists.tdwg.org/mailman/listinfo/tdwg-humboldt or, via email, send a message with subject or body 'help' to tdwg-humboldt-request@lists.tdwg.org<mailto:tdwg-humboldt-request@lists.tdwg.org> You can reach the person managing the list at tdwg-humboldt-owner@lists.tdwg.org<mailto:tdwg-humboldt-owner@lists.tdwg.org> When replying, please edit your Subject line so it is more specific than "Re: Contents of tdwg-humboldt digest..." Today's Topics: 1. Re: Humboldt Core use cases (John Wieczorek) ---------------------------------------------------------------------- Message: 1 Date: Fri, 7 May 2021 00:37:13 -0300 From: John Wieczorek <tuco@berkeley.edu<mailto:tuco@berkeley.edu>> To: Humboldt Core TG <tdwg-humboldt@lists.tdwg.org<mailto:tdwg-humboldt@lists.tdwg.org>> Subject: Re: [tdwg-humboldt] Humboldt Core use cases Message-ID: <CAHwKGGdoXZq7FvOnwFoq2HHYU289+mJ9VHwqOfjGf1zkii0mHQ@mail.gmail.com<mailto:CAHwKGGdoXZq7FvOnwFoq2HHYU289%2BmJ9VHwqOfjGf1zkii0mHQ@mail.gmail.com>> Content-Type: text/plain; charset="utf-8" Hi Neil, I think demonstrating a case for inventories with interactions would be particularly compelling. Working with the Plant-Pollinator Interactions Group in Brazil (https://github.com/BioComp-USP/rebipp-data-standard) has shown that there are many core (pun partially intended) issues in common in terms (another pun?) of shared hierarchical Event structuring. Cheers, John On Wed, Apr 28, 2021 at 4:09 AM Neil Stanley Cobb <Neil.Cobb@nau.edu<mailto:Neil.Cobb@nau.edu>> wrote:
Hi,
I have popped into a couple of working group meetings in the past three weeks. I am not sure I can attend meetings on a regular basis. My primary interest is two-fold; 1) want to extend SCAN <https://scan-bugs.org/portal/index.php>?s ability to incorporate fields from arthropod projects that incorporate inventory/monitoring that DwC does not provide. The biggest use case involves bee/pollinator data sets. We are starting to incorporate files from ecological studies on bees/pollinators. All of the cases so far would benefit from adopting a HC set of fields, however the form (e.g., DwC extensions). I am also interested in monitoring projects and pitfall data (see below); and 2) I do want to provide feedback to make HC as robust and effective as possible.
*Bee/Pollinator Projects* https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=275 Drought and Habitat Fragmentation on Native Bee Assemblages https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=270 Plant?pollinator community assembly across wildfire gradients https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=272 Predicting changes in bee assemblages following state transitions https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=278 Maine State Museum - Brianne Du Clos Pollinator Study *Mosquito Monitoring (i.e., repeated measures)* https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=181 VectorBase (Bioinformatics Resource for Invertebrate Vectors of Human Pathogens) Ground-Dwelling Arthropods (pitfalls)
Scores of data in SCAN were generated from pitfall studies. Currently, there is no way to compare across datasets (i.e. define ?effort? so numbers are expressed in common currency). Sand Brantley is the only publication I know where effort was defined in order to compare spider assemblages from two separate elevation gradients (attached). We might be able to retroactively populate ?effort? metrics for over a million records and a standard to guide the process would be very helpful.
Cheers,
Neil
Neil S. Cobb,
Symbiota Collections of Arthropods Network (SCAN) <https://scan-bugs.org/portal/index.php>
Biodiversity Outreach Network <https://www.bon-earth.org/>
Northern Arizona University Flagstaff, AZ 86011
Neil.Cobb@nau.edu<mailto:Neil.Cobb@nau.edu> neilscobb@gmail.com<mailto:neilscobb@gmail.com>
(Mobile Office) 928-607-4075
Virtual Office: https://us02web.zoom.us/j/82515787249
ORCID https://orcid.org/0000-0002-6155-9444
Do you know where all 200,000 North American arthropod species live?
_______________________________________________ tdwg-humboldt mailing list tdwg-humboldt@lists.tdwg.org<mailto:tdwg-humboldt@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-humboldt
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participants (2)
-
Dmitry Schigel -
Neil Cobb