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John and John,<br>
<br>
OK, great! I think this all makes sense to me now. I think that that
in the wiki discussion you might eventually make the comment that
although materialSampleID is conveniently grouped with other terms
under the Occurrence class, a material sample does not have to be a
sample from a living organism which is documented in an Occurrence. It
could be something that may or may not be known to contain one or more
living organisms (e.g. water samples), part of one or more organisms
(e.g. tissue samples), or even no known living organisms (e.g. rock
samples). Well anyway, you should say that if it is true. I think
that was the intention when the term was being discussed. You can
confirm whether I have this right or not.<br>
<br>
Steve<br>
<br>
John Deck wrote:
<blockquote
cite="mid:CAH_VTFWyeyULFEkwmMpTz7DOm6VjVGXmp1xcvFFwNd00oqrb0A@mail.gmail.com"
type="cite">
<meta http-equiv="Content-Type" content="text/html; ">
<div dir="ltr"><span
id="docs-internal-guid-4fd61313-db1a-6bfe-0f72-dd391f8cadce">
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;">Steve,
</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;">Thanks
for your comments. Responding to both of your emails here.</span></p>
<br>
<span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;"></span>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;">We’ve
removed the class and now have just the MaterialSample dwctype and a
materialSampleID property. dwctype:MaterialSample refines </span><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;"> </span><a
moz-do-not-send="true"
href="http://purl.obolibrary.org/obo/OBI_0000747"
style="text-decoration: none;"><span
style="font-size: 15px; font-family: Arial; background-color: transparent; text-decoration: underline; vertical-align: baseline;">http://purl.obolibrary.org/obo/OBI_0000747</span></a><span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;">.
Also, we’ve updated materialSampleID to be a new term in the
dwc/terms namespace instead of referencing the MiXS namespace. In our
original proposal, we suggested using the MIxS RDF namespace for this
property, however, the GSC did not make MIxS-as-RDF a standard, as
decided recently at GSC15, so we’ve chosen not to use that term (by
convention) and instead propose creating our own materialSampleID
property in the dwc/terms namespace. (A side note: the GSC is still
very much interested in MIxS as RDF and we’ll continue to maintain and
implement </span><a moz-do-not-send="true"
href="https://code.google.com/p/mixs-as-rdf/"
style="text-decoration: none;"><span
style="font-size: 15px; font-family: Arial; background-color: transparent; text-decoration: underline; vertical-align: baseline;">https://code.google.com/p/mixs-as-rdf/</span></a><span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;">
in conjunction with the MIxS developers).</span></p>
<br>
<span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;"></span>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;">Modification
to proposed terms:</span></p>
<br>
<span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;"></span>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Term
Name: MaterialSample</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Identifier:
</span><a moz-do-not-send="true"
href="http://rs.tdwg.org/dwc/terms/MaterialSample"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">http://rs.tdwg.org/dwc/dwctype/MaterialSample</span></a></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Namespace:
</span><span
style="font-size: 13px; font-family: Arial; color: rgb(17, 85, 204); vertical-align: baseline;"><a class="moz-txt-link-freetext" href="http:/">http:/</a></span><a
moz-do-not-send="true" href="http://rs.tdwg.org/dwc/terms"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">rs.tdwg.org/dwctype/</span></a></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Label:
Material Sample</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Definition:
The category of information pertaining to the physical results of a
sampling (or subsampling) event. In biological collections, the
material sample is typically collected, and either preserved or
destructively processed.</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Comment:
For discussion see </span><a moz-do-not-send="true"
href="http://code.google.com/p/darwincore/wiki/DwCTypeVocabulary"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">http://code.google.com/p/darwincore/wiki/DwCTypeVocabulary</span></a><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">
(there will be no further documentation here until the term is ratified)</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Type
of Term: </span><a moz-do-not-send="true"
href="http://www.w3.org/2000/01/rdf-schema#Class"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">http://www.w3.org/2000/01/rdf-schema#Class</span></a></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Refines:
</span><a moz-do-not-send="true"
href="http://purl.obolibrary.org/obo/OBI_0000747"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; background-color: transparent; text-decoration: underline; vertical-align: baseline;">http://purl.obolibrary.org/obo/OBI_0000747</span></a><span
style="font-size: 13px; font-family: Arial; color: rgb(17, 85, 204); background-color: transparent; text-decoration: underline; vertical-align: baseline;"></span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Status:
proposed</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Date
Issued: 2013-03-28</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Date
Modified: 2013-05-25</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Has
Domain:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Has
Range:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Refines:
</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Version:
MaterialSample-2013-05-25</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Replaces:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">IsReplaceBy:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Class:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">ABCD
2.0.6: not in ABCD (someone please confirm or deny this)</span></p>
<br>
<span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;"></span>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Term
Name: materialSampleID</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Identifier:
</span><a moz-do-not-send="true"
href="http://rs.tdwg.org/dwc/terms/MaterialSample"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">http://rs.tdwg.org/dwc/terms/MaterialSampleID</span></a><a
moz-do-not-send="true" href="http://gensc.org/ns/mixs/materialSampleID"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;"></span></a></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Namespace:
</span><a moz-do-not-send="true"
href="http://rs.tdwg.org/dwc/terms/MaterialSample"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">http://rs.tdwg.org/dwc/terms/</span></a><a
moz-do-not-send="true" href="http://gensc.org/ns/mixs"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;"></span></a></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Label:
Material Sample ID</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Definition:
An identifier for the MaterialSample (as opposed to a particular
digital record of the material sample). In the absence of a persistent
global unique identifier, construct one from a combination of
identifiers in the record that will most closely make the
materialSampleID globally unique.</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Comment:
For discussion see </span><a moz-do-not-send="true"
href="http://code.google.com/p/darwincore/wiki/MaterialSample"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">http://code.google.com/p/darwincore/wiki/MaterialSample</span></a><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">
(this page will not exist until the term is ratified).</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Type
of Term: </span><a moz-do-not-send="true"
href="http://www.w3.org/1999/02/22-rdf-syntax-ns#Property"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</span></a></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Refines:
</span><a moz-do-not-send="true"
href="http://purl.org/dc/terms/identifier"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;">http://purl.org/dc/terms/identifier</span></a></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Status:
proposed</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Date
Issued: 2013-03-28</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Date
Modified: 2013-05-25</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Has
Domain:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Has
Range:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Version:
materialSampleID-2013-05-25</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Replaces:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">IsReplaceBy:</span></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">Class:
</span><span
style="font-size: 13px; font-family: Arial; color: rgb(17, 85, 204); text-decoration: underline; vertical-align: baseline;"><a
moz-do-not-send="true" href="http://rs.tdwg.org/dwc/terms/Occurrence">http://rs.tdwg.org/dwc/terms/Occurrence</a></span><a
moz-do-not-send="true"
href="http://purl.obolibrary.org/obo/OBI_0000747"
style="text-decoration: none;"><span
style="font-size: 13px; font-family: Arial; text-decoration: underline; vertical-align: baseline;"></span></a></p>
<p dir="ltr"
style="line-height: 1.15; margin-top: 0pt; margin-bottom: 0pt;"><span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;">ABCD
2.0.6: not in ABCD (someone please confirm or deny this)</span></p>
<br>
<span
style="font-size: 13px; font-family: Arial; color: rgb(80, 0, 80); vertical-align: baseline;"></span><span
style="font-size: 15px; font-family: Arial; color: rgb(0, 0, 0); background-color: transparent; vertical-align: baseline;">John
D. and John W. </span></span><br>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On Mon, May 20, 2013 at 7:39 PM, Steve
Baskauf <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:steve.baskauf@vanderbilt.edu" target="_blank">steve.baskauf@vanderbilt.edu</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div bgcolor="#ffffff" text="#000000">
Here is the second question. The proposal proposes a new
MaterialSample class<br>
<a moz-do-not-send="true"
href="http://rs.tdwg.org/dwc/terms/MaterialSample" target="_blank">http://rs.tdwg.org/dwc/terms/MaterialSample</a><br>
which is in the "main" (dwc:=<a moz-do-not-send="true"
href="http://rs.tdwg.org/dwc/terms/" target="_blank">http://rs.tdwg.org/dwc/terms/</a>
)
namespace. I guess my question is why we need this class. I can
definitely see a rational for a new class defined as part of the DwC
type vocabulary (i.e. dwctype:MaterialSample). It would be used to
type resources that are material samples. But the class terms in the
main (dwc:) namespace are used as a convenient way to group DwC
property terms that might reasonably be used with instances of that
class. However, there really aren't any such terms. <br>
<br>
We already have a convention in which not every type vocabulary class
term has a corresponding class term in the main (dwc:) namespace.
There are dwctype:PreservedSpecimen, dwctype:LivingSpecimen,
dwctype:FossilSpecimen, dwctype:HumanObservation,
dwctype:MachineObservation, and dwctype:NomenclaturalChecklist, none of
which have dwc: namespace analogues. So why does MaterialSample need a
dwc: namespace analog? <br>
<span class="HOEnZb"><font color="#888888"><br>
Steve</font></span>
<div>
<div class="h5"><br>
<br>
John Wieczorek wrote:
<blockquote type="cite">
<div dir="ltr">Dear all,<br>
<br>
TDWG could see a lot of activity in 2013 in anticipation of the meeting
in Florence in October. Much of the activity is related to enabling
integration across multiple parts of our domain. We have the Audubon
Core under review for biodiversity-related media and an impending RDF
Guide to supplement the already extant Text and XML Guides for Darwin
Core.<br>
<br>
This message is to bring your attention to another integrative
initiative, to introduce terms into Darwin Core that will form a nexus
between Occurrences and the interesting things that happen with
physical materials that result from them, such as, but not limited to,
genetic sequencing. A series of meetings for a little over the past
year have inspired our colleagues in the Genomics Standards Consortium
(GSC) to propose to their constituency to align their terms with Darwin
Core, including adopting some of the Darwin Core terms in place of
their own that have the same meaning. Out of these discussions has come
the realization that neither community has terms to accommodate the
concept of an identifiable (objectively, not taxonomically), trackable
material sample. This message constitutes such a proposal.<br>
<br>
This proposal would have no impact on those publishing purely taxonomic
data. It would also have no impact on those publishing occurrence data
unless they want to increase their capacity to distinguish material
samples from organisms more rigorously than is now possible using only
the dwc:preparations term.<br>
<br>
The initial request for new terms can be found in the Darwin Core Issue
tracker as <a moz-do-not-send="true"
href="http://code.google.com/p/darwincore/issues/detail?id=167"
target="_blank">http://code.google.com/p/darwincore/issues/detail?id=167</a>.
Below I have elaborated nad formalized the request into the three
distinct terms under consideration, initiating the 30 day minimum
public review process to seek consensus on their inclusion in the
Darwin Core standard. Your job, should you choose to accept it, is to
discuss the merits or any perceived problems in the inclusion of these
three terms in Darwin Core.<br>
<br>
Below I will give the proposed properties of three terms as they would
appear in the Darwin Core Quick Reference Guide, though these
properties would be included in the RDF of the normative form of the
documentation.<br>
<br>
A new MaterialSample class: This is for the purpose of organizing
properties, just as the existing classes (Occurrence, Event, Location,
GeologicalContext, Identification, Taxon, etc.) do, without having any
terms declare this class as their domain. <br>
<br>
Term Name: MaterialSample<br>
Identifier: <a moz-do-not-send="true"
href="http://rs.tdwg.org/dwc/terms/MaterialSample" target="_blank">http://rs.tdwg.org/dwc/terms/MaterialSample</a><br>
Namespace: <a moz-do-not-send="true" href="http:/" target="_blank">http:/</a><a
moz-do-not-send="true" href="http://rs.tdwg.org/dwc/terms"
target="_blank">rs.tdwg.org/dwc/terms</a><br>
Label: Material Sample<br>
Definition: The category of information pertaining to the physical
results of a sampling (or subsampling) event. In biological
collections, the material sample is typically collected, and either
preserved or destructively processed, with the intention of being
representative of a greater whole.<br>
Comment: For discussion see <a moz-do-not-send="true"
href="http://code.google.com/p/darwincore/wiki/MaterialSample"
target="_blank">http://code.google.com/p/darwincore/wiki/MaterialSample</a>
(this page will not exist until the term is ratified).<br>
Type of Term: <a moz-do-not-send="true"
href="http://www.w3.org/2000/01/rdf-schema#Class" target="_blank">http://www.w3.org/2000/01/rdf-schema#Class</a><br>
Refines:<br>
Status: proposed<br>
Date Issued: 2013-03-28<br>
Date Modified: 2013-04-08<br>
Has Domain:<br>
Has Range:<br>
Version: MaterialSample-2013-03-28<br>
Replaces:<br>
IsReplaceBy:<br>
Class:<br>
ABCD 2.0.6: not in ABCD (someone please confirm or deny this)<br>
<br>
A Darwin Core Type Vocabulary value for basisOfRecord is needed to
represent this new class of information. Luckily, a term already exists
in the Ontology for Biomedical Investigations (<a moz-do-not-send="true"
href="http://www.ontobee.org/browser/rdf.php?o=OBI&iri=http://purl.obolibrary.org/obo/OBI_0000747"
target="_blank">http://www.ontobee.org/browser/rdf.php?o=OBI&iri=http://purl.obolibrary.org/obo/OBI_0000747</a>).
We and the GSC both propose to reuse this class within Darwin Core as
below, making it the cross-ver point between the two domains.<br>
<br>
Term Name: MaterialSample<br>
Identifier: <a moz-do-not-send="true"
href="http://rs.tdwg.org/dwc/terms/MaterialSample" target="_blank">http://rs.tdwg.org/dwc/terms/MaterialSample</a><br>
Namespace: <a moz-do-not-send="true"
href="http://purl.obolibrary.org/obo/OBI_0000747" target="_blank">http://purl.obolibrary.org/obo/OBI_0000747</a><br>
Label: material sample<br>
Definition: A material entity that has the material sample role<br>
Comment: For discussion see <a moz-do-not-send="true"
href="http://code.google.com/p/darwincore/wiki/DwCTypeVocabulary"
target="_blank">http://code.google.com/p/darwincore/wiki/DwCTypeVocabulary</a>
(there will be no further documentation here until the term is ratified)<br>
Type of Term: <a moz-do-not-send="true"
href="http://www.w3.org/2000/01/rdf-schema#Class" target="_blank">http://www.w3.org/2000/01/rdf-schema#Class</a><br>
Refines:<a moz-do-not-send="true"
href="http://purl.obolibrary.org/obo/OBI_0100051" target="_blank">http://purl.obolibrary.org/obo/OBI_0100051</a><br>
Status: recommended<br>
Date Issued: 2013-03-28<br>
Date Modified: 2013-03-28<br>
Has Domain:<br>
Has Range:<br>
Version: MaterialSample-2013-03-28<br>
Replaces:<br>
IsReplaceBy:<br>
Class:<br>
ABCD 2.0.6: not in ABCD<br>
<br>
In keeping with all other classes in Darwin Core, the Material Sample
class would have a corresponding identifier property. The Genomics
Standards Consortium (GSC) is in the process of proposing this term. If
it is accepted, we propose to use it, and its properties would be as
below, otherwise, the properties would be the same, but have the Darwin
Core namespace and identifier URI.<br>
<br>
Term Name: materialSampleID<br>
Identifier: <a moz-do-not-send="true"
href="http://gensc.org/ns/mixs/materialSampleID" target="_blank">http://gensc.org/ns/mixs/materialSampleID</a><br>
Namespace: <a moz-do-not-send="true" href="http://gensc.org/ns/mixs"
target="_blank">http://gensc.org/ns/mixs</a><br>
Label: Material Sample ID<br>
Definition: An identifier for the MaterialSample (as opposed to a
particular digital record of the material sample). In the absence of a
persistent global unique identifier, construct one from a combination
of identifiers in the record that will most closely make the
materialSampleID globally unique.<br>
Comment: For discussion see <a moz-do-not-send="true"
href="http://code.google.com/p/darwincore/wiki/MaterialSample"
target="_blank">http://code.google.com/p/darwincore/wiki/MaterialSample</a>
(this page will not exist until the term is ratified).<br>
Type of Term: <a moz-do-not-send="true"
href="http://www.w3.org/1999/02/22-rdf-syntax-ns#Property"
target="_blank">http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</a><br>
Refines: <a moz-do-not-send="true"
href="http://purl.org/dc/terms/identifier" target="_blank">http://purl.org/dc/terms/identifier</a><br>
Status: proposed<br>
Date Issued: 2013-03-28<br>
Date Modified: 2013-04-08<br>
Has Domain:<br>
Has Range:<br>
Version: materialSampleID-2013-03-28<br>
Replaces:<br>
IsReplaceBy:<br>
Class: <a moz-do-not-send="true"
href="http://purl.obolibrary.org/obo/OBI_0000747" target="_blank">http://purl.obolibrary.org/obo/OBI_0000747</a><br>
ABCD 2.0.6: not in ABCD (someone please confirm or deny this) </div>
</blockquote>
<br>
</div>
</div>
<div class="im">
<pre cols="72">--
Steven J. Baskauf, Ph.D., Senior Lecturer
Vanderbilt University Dept. of Biological Sciences
postal mail address:
PMB 351634
Nashville, TN 37235-1634, U.S.A.
delivery address:
2125 Stevenson Center
1161 21st Ave., S.
Nashville, TN 37235
office: 2128 Stevenson Center
phone: <a moz-do-not-send="true" href="tel:%28615%29%20343-4582"
value="+16153434582" target="_blank">(615) 343-4582</a>, fax: <a
moz-do-not-send="true" href="tel:%28615%29%20322-4942"
value="+16153224942" target="_blank">(615) 322-4942</a>
If you fax, please phone or email so that I will know to look for it.
<a moz-do-not-send="true" href="http://bioimages.vanderbilt.edu"
target="_blank">http://bioimages.vanderbilt.edu</a>
</pre>
</div>
</div>
<br>
_______________________________________________<br>
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<a moz-do-not-send="true" href="mailto:tdwg-content@lists.tdwg.org">tdwg-content@lists.tdwg.org</a><br>
<a moz-do-not-send="true"
href="http://lists.tdwg.org/mailman/listinfo/tdwg-content"
target="_blank">http://lists.tdwg.org/mailman/listinfo/tdwg-content</a><br>
<br>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
John Deck<br>
(541) 321-0689<br>
</div>
</div>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Steven J. Baskauf, Ph.D., Senior Lecturer
Vanderbilt University Dept. of Biological Sciences
postal mail address:
PMB 351634
Nashville, TN 37235-1634, U.S.A.
delivery address:
2125 Stevenson Center
1161 21st Ave., S.
Nashville, TN 37235
office: 2128 Stevenson Center
phone: (615) 343-4582, fax: (615) 322-4942
If you fax, please phone or email so that I will know to look for it.
<a class="moz-txt-link-freetext" href="http://bioimages.vanderbilt.edu">http://bioimages.vanderbilt.edu</a>
</pre>
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